Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3l3mA92Poly [ADP-ribose] polymerase 12.4.2.30

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3l3mA92Poly [ADP-ribose] polymerase 12.4.2.301.000
2rd678PPoly [ADP-ribose] polymerase 12.4.2.300.568
3gn73GNPoly [ADP-ribose] polymerase 12.4.2.300.562
2rcwAAIPoly [ADP-ribose] polymerase 12.4.2.300.561
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.536
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.530
3l3lL3LPoly [ADP-ribose] polymerase 12.4.2.300.518
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.503
4r5wXAVPoly [ADP-ribose] polymerase 12.4.2.300.500
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.497
4hhy15RPoly [ADP-ribose] polymerase 12.4.2.300.496
1uk0FRMPoly [ADP-ribose] polymerase 12.4.2.300.482
1paxDHQPoly [ADP-ribose] polymerase 12.4.2.300.464
3ce0P34Poly [ADP-ribose] polymerase 32.4.2.300.459
4gv7MEWPoly [ADP-ribose] polymerase 12.4.2.300.454
2fapRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.450
2fapRADSerine/threonine-protein kinase mTOR2.7.11.10.450
4gv25MEPoly [ADP-ribose] polymerase 32.4.2.300.450
3c49KU8Poly [ADP-ribose] polymerase 32.4.2.300.449
1nsgRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.445
1nsgRADSerine/threonine-protein kinase mTOR2.7.11.10.445
1fapRAPPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.444
1fapRAPSerine/threonine-protein kinase mTOR2.7.11.10.444
4fapARDPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.443
4fapARDSerine/threonine-protein kinase mTOR2.7.11.10.443