2.260 Å
X-ray
2001-09-18
| Name: | Glycogen phosphorylase, muscle form |
|---|---|
| ID: | PYGM_RABIT |
| AC: | P00489 |
| Organism: | Oryctolagus cuniculus |
| Reign: | Eukaryota |
| TaxID: | 9986 |
| EC Number: | 2.4.1.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 23.817 |
|---|---|
| Number of residues: | 41 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 6 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.368 | 702.000 |
| % Hydrophobic | % Polar |
|---|---|
| 33.65 | 66.35 |
| According to VolSite | |

| HET Code: | BZD |
|---|---|
| Formula: | C14H18N2O7 |
| Molecular weight: | 326.302 g/mol |
| DrugBank ID: | DB04295 |
| Buried Surface Area: | 62.58 % |
| Polar Surface area: | 148.35 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 6 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 34.0183 | 23.551 | 29.6113 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O7 | N | LEU- 136 | 3.03 | 156.06 | H-Bond (Protein Donor) |
| C6 | CD2 | LEU- 139 | 3.95 | 0 | Hydrophobic |
| O6 | ND1 | HIS- 377 | 2.75 | 157.05 | H-Bond (Ligand Donor) |
| O4 | ND2 | ASN- 484 | 3.23 | 124.41 | H-Bond (Protein Donor) |
| O6 | ND2 | ASN- 484 | 2.76 | 151.26 | H-Bond (Protein Donor) |
| O3 | OE1 | GLU- 672 | 2.68 | 157.28 | H-Bond (Ligand Donor) |
| O3 | N | SER- 674 | 3.15 | 163.04 | H-Bond (Protein Donor) |
| C4 | CB | SER- 674 | 4.27 | 0 | Hydrophobic |
| O3 | N | GLY- 675 | 3.13 | 125.33 | H-Bond (Protein Donor) |
| O4 | N | GLY- 675 | 2.65 | 142.63 | H-Bond (Protein Donor) |
| O2 | O | HOH- 1080 | 2.83 | 153.81 | H-Bond (Protein Donor) |
| O8 | O | HOH- 1137 | 2.95 | 179.96 | H-Bond (Protein Donor) |