1.800 Å
X-ray
2009-01-05
Name: | Uncharacterized protein |
---|---|
ID: | O26771_METTH |
AC: | O26771 |
Organism: | Methanothermobacter thermautotrophicus |
Reign: | Archaea |
TaxID: | 187420 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 11.854 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.282 | 688.500 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | SAM |
---|---|
Formula: | C15H23N6O5S |
Molecular weight: | 399.445 g/mol |
DrugBank ID: | DB00118 |
Buried Surface Area: | 73.48 % |
Polar Surface area: | 189.77 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 2 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-1.00778 | 5.54241 | -10.9029 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N | OH | TYR- 107 | 2.99 | 145.3 | H-Bond (Ligand Donor) |
CB | CE2 | PHE- 128 | 4.1 | 0 | Hydrophobic |
OXT | N | THR- 137 | 3.46 | 158.39 | H-Bond (Protein Donor) |
OXT | OG1 | THR- 137 | 2.92 | 167.58 | H-Bond (Protein Donor) |
N3 | N | ILE- 154 | 2.99 | 140.03 | H-Bond (Protein Donor) |
N6 | OE1 | GLU- 181 | 2.7 | 153.87 | H-Bond (Ligand Donor) |
CB | CB | ALA- 195 | 3.95 | 0 | Hydrophobic |
CE | CB | ALA- 195 | 3.6 | 0 | Hydrophobic |
SD | CD2 | LEU- 197 | 4.04 | 0 | Hydrophobic |
CE | CB | LEU- 197 | 3.38 | 0 | Hydrophobic |
C5' | CB | LEU- 197 | 4.42 | 0 | Hydrophobic |
N7 | N | GLU- 199 | 2.92 | 158.23 | H-Bond (Protein Donor) |
N6 | O | GLU- 199 | 3.41 | 153.2 | H-Bond (Ligand Donor) |