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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

4rlh

2.260 Å

X-ray

2014-10-17

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Enoyl-[acyl-carrier-protein] reductase [NADH]
ID:Q63SW7_BURPS
AC:Q63SW7
Organism:Burkholderia pseudomallei
Reign:Bacteria
TaxID:272560
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:19.764
Number of residues:29
Including
Standard Amino Acids: 29
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.248985.500

% Hydrophobic% Polar
51.3748.63
According to VolSite

Ligand :
4rlh_2 Structure
HET Code: 0WE
Formula: C22H23N3O3
Molecular weight: 377.436 g/mol
DrugBank ID: -
Buried Surface Area:56.72 %
Polar Surface area: 75.44 Å2
Number of
H-Bond Acceptors: 3
H-Bond Donors: 1
Rings: 4
Aromatic rings: 3
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 5

Mass center Coordinates

XYZ
48.7771-16.3118-12.7397


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
N21NALA- 953.05171.05H-Bond
(Protein Donor)
N36OALA- 953.06151.68H-Bond
(Ligand Donor)
C14CD1ILE- 1004.360Hydrophobic
C23CD1ILE- 10040Hydrophobic
C38CZTYR- 1463.590Hydrophobic
C13CBASN- 1553.930Hydrophobic
C12CBTYR- 1563.980Hydrophobic
C38CBPRO- 1913.770Hydrophobic
C14CD1ILE- 2003.540Hydrophobic
C38CE1PHE- 2033.580Hydrophobic
C38CD1ILE- 2064.410Hydrophobic
C11CD1ILE- 2063.570Hydrophobic