scPDB - 2g1y entry

Protein Data Bank Entry:

PDB ID : 2g1y

Resolution :2.500 Å

Experimental Method : X-ray

Deposition Date : 2006-02-15

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Renin
ID:	RENI_HUMAN
AC:	P00797
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	3.4.23.15

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	30.932
Number of residues:	37
Including
Standard Amino Acids:	34
Non Standard Amino Acids:	0
Water Molecules:	3
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.426	1093.500

% Hydrophobic	% Polar
43.83	56.17
According to VolSite

Ligand :

HET Code:	5IG
Formula:	C20H27N5O3
Molecular weight:	385.460 g/mol
DrugBank ID:	DB07174
Buried Surface Area:	69.05 %
Polar Surface area:	116.59 Å2

Number of
H-Bond Acceptors:	7
H-Bond Donors:	2
Rings:	3
Aromatic rings:	2
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	6

Mass center Coordinates

X	Y	Z
24.1876	105.678	129.54

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C17	CG	GLN- 14	3.99	0	Hydrophobic	false
O1	N	TYR- 15	3.21	168.72	H-Bond (Protein Donor)	false
C19	CB	TYR- 15	3.82	0	Hydrophobic	false
C17	CG2	VAL- 31	4.45	0	Hydrophobic	false
C18	CG1	VAL- 31	4.31	0	Hydrophobic	false
C19	CG1	VAL- 31	3.78	0	Hydrophobic	false
C5	CB	VAL- 31	3.6	0	Hydrophobic	false
N4	OD1	ASP- 33	3.07	130.9	H-Bond (Ligand Donor)	false
N4	OD2	ASP- 33	2.99	126.81	H-Bond (Ligand Donor)	false
C5	CB	ASP- 33	4.04	0	Hydrophobic	false
C6	CE2	TYR- 78	3.86	0	Hydrophobic	false
C7	CB	TYR- 78	3.96	0	Hydrophobic	false
N3	OG	SER- 79	3.1	140.11	H-Bond (Ligand Donor)	false
N3	OG1	THR- 80	3.43	143.45	H-Bond (Ligand Donor)	false
C8	CG	PRO- 113	4.35	0	Hydrophobic	false
C21	CB	PRO- 113	3.84	0	Hydrophobic	false
C20	CB	ALA- 117	3.51	0	Hydrophobic	false
C17	CE1	PHE- 119	4.07	0	Hydrophobic	false
C20	CE1	PHE- 119	3.91	0	Hydrophobic	false
C6	CG2	VAL- 122	3.66	0	Hydrophobic	false
C19	CZ	TYR- 157	4.15	0	Hydrophobic	false
O4	O	HOH- 1033	2.71	160.31	H-Bond (Protein Donor)	false