2.070 Å
X-ray
2012-01-18
Name: | Pantothenate synthetase |
---|---|
ID: | PANC_MYCTO |
AC: | P9WIL4 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83331 |
EC Number: | 6.3.2.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 25.866 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.558 | 894.375 |
% Hydrophobic | % Polar |
---|---|
40.00 | 60.00 |
According to VolSite |
HET Code: | MS0 |
---|---|
Formula: | C11H9O4 |
Molecular weight: | 205.187 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 67.89 % |
Polar Surface area: | 62.5 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
0.282333 | -10.3189 | 39.4561 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O11 | NE2 | HIS- 44 | 2.91 | 173.6 | H-Bond (Protein Donor) |
C19 | CD2 | LEU- 50 | 4.29 | 0 | Hydrophobic |
C22 | CD2 | LEU- 50 | 4.09 | 0 | Hydrophobic |
O12 | NZ | LYS- 160 | 2.76 | 146.75 | H-Bond (Protein Donor) |
O12 | NZ | LYS- 160 | 2.76 | 0 | Ionic (Protein Cationic) |
C16 | CB | LYS- 160 | 3.84 | 0 | Hydrophobic |
O21 | N | VAL- 187 | 2.94 | 174.66 | H-Bond (Protein Donor) |
C22 | CG2 | VAL- 187 | 3.82 | 0 | Hydrophobic |
C16 | CB | MET- 195 | 4.11 | 0 | Hydrophobic |
O11 | N | SER- 197 | 3.19 | 168.77 | H-Bond (Protein Donor) |