2.070 Å
X-ray
2012-01-18
| Name: | Pantothenate synthetase |
|---|---|
| ID: | PANC_MYCTO |
| AC: | P9WIL4 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 83331 |
| EC Number: | 6.3.2.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 25.866 |
|---|---|
| Number of residues: | 25 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.558 | 894.375 |
| % Hydrophobic | % Polar |
|---|---|
| 40.00 | 60.00 |
| According to VolSite | |

| HET Code: | MS0 |
|---|---|
| Formula: | C11H9O4 |
| Molecular weight: | 205.187 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 67.89 % |
| Polar Surface area: | 62.5 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 0 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 0.282333 | -10.3189 | 39.4561 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O11 | NE2 | HIS- 44 | 2.91 | 173.6 | H-Bond (Protein Donor) |
| C19 | CD2 | LEU- 50 | 4.29 | 0 | Hydrophobic |
| C22 | CD2 | LEU- 50 | 4.09 | 0 | Hydrophobic |
| O12 | NZ | LYS- 160 | 2.76 | 146.75 | H-Bond (Protein Donor) |
| O12 | NZ | LYS- 160 | 2.76 | 0 | Ionic (Protein Cationic) |
| C16 | CB | LYS- 160 | 3.84 | 0 | Hydrophobic |
| O21 | N | VAL- 187 | 2.94 | 174.66 | H-Bond (Protein Donor) |
| C22 | CG2 | VAL- 187 | 3.82 | 0 | Hydrophobic |
| C16 | CB | MET- 195 | 4.11 | 0 | Hydrophobic |
| O11 | N | SER- 197 | 3.19 | 168.77 | H-Bond (Protein Donor) |