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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ddhMS0Pantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4ddhMS0Pantothenate synthetase6.3.2.11.000
3ivgFG5Pantothenate synthetase6.3.2.10.687
3isjA8DPantothenate synthetase6.3.2.10.663
3iobA4DPantothenate synthetase6.3.2.10.543
5kwvANPPantothenate synthetase/0.528
3coy53HPantothenate synthetase6.3.2.10.518
3imgBZ3Pantothenate synthetase6.3.2.10.514
2x3fAPCPantothenate synthetase/0.513
3iocA5DPantothenate synthetase6.3.2.10.511
3qttANPPantothenate synthetase/0.497
1n2hPAJPantothenate synthetase6.3.2.10.496
1n2gAPCPantothenate synthetase6.3.2.10.481
3ivcFG4Pantothenate synthetase6.3.2.10.479
3iodA6DPantothenate synthetase6.3.2.10.472
2a84ATPPantothenate synthetase6.3.2.10.467
3cow52HPantothenate synthetase6.3.2.10.460
3ioeA7DPantothenate synthetase6.3.2.10.449