2.600 Å
X-ray
2011-02-23
Name: | Pantothenate synthetase |
---|---|
ID: | PANC_FRATT |
AC: | Q5NF57 |
Organism: | Francisella tularensis subsp. tularensis |
Reign: | Bacteria |
TaxID: | 177416 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 59.282 |
---|---|
Number of residues: | 39 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.429 | 715.500 |
% Hydrophobic | % Polar |
---|---|
41.51 | 58.49 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 77.58 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
12.3932 | 42.8218 | 160.668 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CG2 | THR- 31 | 4.33 | 0 | Hydrophobic |
O1A | N | MET- 32 | 2.99 | 138.78 | H-Bond (Protein Donor) |
O3G | NE2 | HIS- 36 | 2.74 | 155.77 | H-Bond (Protein Donor) |
O2A | NE2 | HIS- 39 | 2.85 | 164.67 | H-Bond (Protein Donor) |
C4' | CD2 | LEU- 42 | 3.98 | 0 | Hydrophobic |
C1' | CD2 | LEU- 42 | 3.81 | 0 | Hydrophobic |
O2G | OH | TYR- 73 | 3.3 | 154.33 | H-Bond (Protein Donor) |
O3' | N | GLY- 150 | 3.09 | 166.51 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 152 | 2.55 | 0 | Ionic (Protein Cationic) |
N7 | NZ | LYS- 152 | 3.39 | 123.76 | H-Bond (Protein Donor) |
O2' | OD2 | ASP- 153 | 2.66 | 161.23 | H-Bond (Ligand Donor) |
N6 | O | GLN- 179 | 3.31 | 174.16 | H-Bond (Ligand Donor) |
N1 | N | GLN- 179 | 2.89 | 173.81 | H-Bond (Protein Donor) |
N6 | O | LEU- 187 | 2.55 | 151.43 | H-Bond (Ligand Donor) |
O1G | OG | SER- 188 | 2.83 | 166.88 | H-Bond (Protein Donor) |
O2G | N | SER- 189 | 3.45 | 136.63 | H-Bond (Protein Donor) |
O3G | N | SER- 189 | 2.7 | 138.68 | H-Bond (Protein Donor) |
C3' | CG | PRO- 272 | 3.57 | 0 | Hydrophobic |
O3' | O | HOH- 302 | 2.72 | 179.99 | H-Bond (Protein Donor) |