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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ddhMS0Pantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4ddhMS0Pantothenate synthetase6.3.2.11.000
3isjA8DPantothenate synthetase6.3.2.10.690
3imeBZ2Pantothenate synthetase6.3.2.10.678
3iobA4DPantothenate synthetase6.3.2.10.638
3ivgFG5Pantothenate synthetase6.3.2.10.614
3iodA6DPantothenate synthetase6.3.2.10.601
3imgBZ3Pantothenate synthetase6.3.2.10.560
3iocA5DPantothenate synthetase6.3.2.10.552
3coy53HPantothenate synthetase6.3.2.10.551
3imgBZ2Pantothenate synthetase6.3.2.10.547
1n2hPAJPantothenate synthetase6.3.2.10.546
1n2jPAFPantothenate synthetase6.3.2.10.538
1n2iPAJPantothenate synthetase6.3.2.10.536
3coz54HPantothenate synthetase6.3.2.10.528
3ioeA7DPantothenate synthetase6.3.2.10.517
3cow52HPantothenate synthetase6.3.2.10.501
3ivxFG6Pantothenate synthetase6.3.2.10.497
5kwvANPPantothenate synthetase/0.481
2x3fAPCPantothenate synthetase/0.467
1n2eAPCPantothenate synthetase6.3.2.10.457
5hg0SAMPantothenate synthetase/0.442