scPDB - 3coz entry

Protein Data Bank Entry:

PDB ID : 3coz

Resolution :2.000 Å

Experimental Method : X-ray

Deposition Date : 2008-03-29

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Pantothenate synthetase
ID:	PANC_MYCTU
AC:	P9WIL5
Organism:	Mycobacterium tuberculosis
Reign:	Bacteria
TaxID:	83332
EC Number:	6.3.2.1

Chains:

Chain Name:	Percentage of Residues within binding site
B	100 %

Ligand binding site composition:

B-Factor:	29.255
Number of residues:	42
Including
Standard Amino Acids:	39
Non Standard Amino Acids:	0
Water Molecules:	3
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.298	769.500

% Hydrophobic	% Polar
39.47	60.53
According to VolSite

Ligand :

HET Code:	54H
Formula:	C15H23N7O7S
Molecular weight:	445.451 g/mol
DrugBank ID:	-
Buried Surface Area:	71.47 %
Polar Surface area:	229.86 Å2

Number of
H-Bond Acceptors:	11
H-Bond Donors:	4
Rings:	3
Aromatic rings:	2
Anionic atoms:	1
Cationic atoms:	1
Rule of Five Violation:	1
Rotatable Bonds:	7

Mass center Coordinates

X	Y	Z
0.821467	-9.83927	35.9383

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
CG2	CB	PRO- 38	4.17	0	Hydrophobic	false
CG1	CB	PRO- 38	3.98	0	Hydrophobic	false
C5'	CB	THR- 39	4.17	0	Hydrophobic	false
CG1	CG	MET- 40	4.35	0	Hydrophobic	false
OAG	N	MET- 40	2.84	164.37	H-Bond (Protein Donor)	false
C1'	CD1	LEU- 50	4.09	0	Hydrophobic	false
C4'	CD1	LEU- 50	3.89	0	Hydrophobic	false
N	OE1	GLN- 72	2.76	165.06	H-Bond (Ligand Donor)	false
CG2	CE2	PHE- 157	3.59	0	Hydrophobic	false
O3'	N	GLY- 158	2.9	163.3	H-Bond (Protein Donor)	false
O2'	N	GLY- 158	3.4	127.06	H-Bond (Protein Donor)	false
O2'	OD2	ASP- 161	2.66	159.07	H-Bond (Ligand Donor)	false
O	NE2	GLN- 164	3.38	163.7	H-Bond (Protein Donor)	false
N1	N	VAL- 187	2.91	172.89	H-Bond (Protein Donor)	false
N6	O	VAL- 187	3.12	166.65	H-Bond (Ligand Donor)	false
N6	O	MET- 195	2.86	158.93	H-Bond (Ligand Donor)	false
O3'	O	HOH- 833	2.87	159.18	H-Bond (Ligand Donor)	false