2.390 Å
X-ray
2009-08-10
Name: | Pantothenate synthetase |
---|---|
ID: | PANC_MYCTU |
AC: | P9WIL5 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | 6.3.2.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 30.095 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.723 | 880.875 |
% Hydrophobic | % Polar |
---|---|
43.68 | 56.32 |
According to VolSite |
HET Code: | BZ2 |
---|---|
Formula: | C9H5O3 |
Molecular weight: | 161.134 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.91 % |
Polar Surface area: | 53.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
1.9545 | -10.2663 | 31.4222 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAE | CB | PRO- 38 | 3.72 | 0 | Hydrophobic |
OAA | N | MET- 40 | 2.86 | 142.36 | H-Bond (Protein Donor) |
CAK | CG | MET- 40 | 3.91 | 0 | Hydrophobic |
OAA | NE2 | HIS- 47 | 3.15 | 142.33 | H-Bond (Protein Donor) |
CAD | CG1 | VAL- 139 | 3.87 | 0 | Hydrophobic |
CAC | CG1 | VAL- 142 | 3.8 | 0 | Hydrophobic |
CAD | CG2 | VAL- 143 | 3.52 | 0 | Hydrophobic |
CAC | CD1 | LEU- 146 | 4.46 | 0 | Hydrophobic |