1.550 Å
X-ray
2004-12-09
Name: | Cysteine synthase |
---|---|
ID: | CYSK_HAEIN |
AC: | P45040 |
Organism: | Haemophilus influenzae |
Reign: | Bacteria |
TaxID: | 71421 |
EC Number: | 2.5.1.47 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 16.956 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.889 | 695.250 |
% Hydrophobic | % Polar |
---|---|
39.32 | 60.68 |
According to VolSite |
HET Code: | ASN_LEU_ASN_ILE |
---|---|
Formula: | C20H36N6O7 |
Molecular weight: | 472.536 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.41 % |
Polar Surface area: | 241.24 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 6 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 15 |
X | Y | Z |
---|---|---|
19.6021 | 1.50715 | 41.5862 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
OXT | OG1 | THR- 69 | 2.73 | 164.98 | H-Bond (Protein Donor) |
OD1 | N | SER- 70 | 2.99 | 169.76 | H-Bond (Protein Donor) |
ND2 | OG | SER- 70 | 3.06 | 163.11 | H-Bond (Ligand Donor) |
O | N | THR- 73 | 3.04 | 163.87 | H-Bond (Protein Donor) |
CB | SD | MET- 120 | 3.78 | 0 | Hydrophobic |
CD1 | CD1 | ILE- 124 | 4.21 | 0 | Hydrophobic |
OXT | NE2 | GLN- 143 | 2.79 | 176.34 | H-Bond (Protein Donor) |
CB | CZ | PHE- 144 | 4.36 | 0 | Hydrophobic |
CD1 | CZ | PHE- 144 | 3.97 | 0 | Hydrophobic |
CD2 | CB | ALA- 231 | 4.42 | 0 | Hydrophobic |
CD1 | CB | ALA- 231 | 4.08 | 0 | Hydrophobic |
CD2 | CE2 | PHE- 233 | 3.5 | 0 | Hydrophobic |