1.900 Å
X-ray
2012-05-08
Name: | 3-oxoacyl-[acyl-carrier-protein] synthase 2 |
---|---|
ID: | A4JL30_BURVG |
AC: | A4JL30 |
Organism: | Burkholderia vietnamiensis ) |
Reign: | Bacteria |
TaxID: | 269482 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 7.519 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.064 | 452.250 |
% Hydrophobic | % Polar |
---|---|
44.03 | 55.97 |
According to VolSite |
HET Code: | N32 |
---|---|
Formula: | C24H26NO6 |
Molecular weight: | 424.466 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 59.59 % |
Polar Surface area: | 126.76 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 3 |
Rings: | 4 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
5.29619 | 4.24071 | -44.4764 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C28 | CB | ARG- 215 | 4.4 | 0 | Hydrophobic |
C18 | CB | ALA- 216 | 4.4 | 0 | Hydrophobic |
N28 | O | THR- 280 | 2.78 | 176.1 | H-Bond (Ligand Donor) |
C2 | CB | ALA- 281 | 4.35 | 0 | Hydrophobic |
O20 | OG1 | THR- 317 | 2.73 | 174.09 | H-Bond (Protein Donor) |
C3 | CB | THR- 317 | 4.11 | 0 | Hydrophobic |
O19 | N | VAL- 319 | 2.99 | 155.92 | H-Bond (Protein Donor) |
C2 | CB | VAL- 319 | 4.2 | 0 | Hydrophobic |
O32 | NE2 | HIS- 349 | 3.2 | 124.12 | H-Bond (Protein Donor) |
O33 | NE2 | HIS- 349 | 2.67 | 167.79 | H-Bond (Protein Donor) |
C26 | CB | PHE- 407 | 4.15 | 0 | Hydrophobic |