3.000 Å
X-ray
2015-11-02
| Name: | Flagellum-specific ATP synthase |
|---|---|
| ID: | FLII_SALTY |
| AC: | P26465 |
| Organism: | Salmonella typhimurium |
| Reign: | Bacteria |
| TaxID: | 99287 |
| EC Number: | 3.6.3.14 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| D | 100 % |
| B-Factor: | 49.764 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.889 | 1562.625 |
| % Hydrophobic | % Polar |
|---|---|
| 33.48 | 66.52 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 50.23 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -47.4542 | 21.1194 | 19.3751 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3B | N | GLY- 185 | 3.32 | 165.87 | H-Bond (Protein Donor) |
| O3A | N | GLY- 187 | 3.46 | 124.64 | H-Bond (Protein Donor) |
| O1B | N | LYS- 188 | 2.8 | 146.61 | H-Bond (Protein Donor) |
| O1B | N | SER- 189 | 3.5 | 161.94 | H-Bond (Protein Donor) |
| O1A | N | VAL- 190 | 3.42 | 150.09 | H-Bond (Protein Donor) |
| C5' | CG2 | VAL- 190 | 4.26 | 0 | Hydrophobic |
| C1' | CZ | TYR- 363 | 3.72 | 0 | Hydrophobic |
| DuAr | DuAr | TYR- 363 | 3.95 | 0 | Aromatic Face/Face |