3.000 Å
X-ray
2015-11-02
Name: | Flagellum-specific ATP synthase |
---|---|
ID: | FLII_SALTY |
AC: | P26465 |
Organism: | Salmonella typhimurium |
Reign: | Bacteria |
TaxID: | 99287 |
EC Number: | 3.6.3.14 |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 49.764 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.889 | 1562.625 |
% Hydrophobic | % Polar |
---|---|
33.48 | 66.52 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 50.23 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-47.4542 | 21.1194 | 19.3751 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | GLY- 185 | 3.32 | 165.87 | H-Bond (Protein Donor) |
O3A | N | GLY- 187 | 3.46 | 124.64 | H-Bond (Protein Donor) |
O1B | N | LYS- 188 | 2.8 | 146.61 | H-Bond (Protein Donor) |
O1B | N | SER- 189 | 3.5 | 161.94 | H-Bond (Protein Donor) |
O1A | N | VAL- 190 | 3.42 | 150.09 | H-Bond (Protein Donor) |
C5' | CG2 | VAL- 190 | 4.26 | 0 | Hydrophobic |
C1' | CZ | TYR- 363 | 3.72 | 0 | Hydrophobic |
DuAr | DuAr | TYR- 363 | 3.95 | 0 | Aromatic Face/Face |