2.860 Å
X-ray
2013-06-21
Name: | C-terminal-binding protein 2 |
---|---|
ID: | CTBP2_HUMAN |
AC: | P56545 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 100 % |
B-Factor: | 52.369 |
---|---|
Number of residues: | 48 |
Including | |
Standard Amino Acids: | 45 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.809 | 884.250 |
% Hydrophobic | % Polar |
---|---|
39.31 | 60.69 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 67.27 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
8.49518 | -23.5162 | 53.0554 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4N | CG2 | THR- 134 | 4.24 | 0 | Hydrophobic |
O2A | N | ARG- 190 | 3.05 | 152.62 | H-Bond (Protein Donor) |
O2A | NH1 | ARG- 190 | 2.74 | 128.1 | H-Bond (Protein Donor) |
O2A | CZ | ARG- 190 | 3.82 | 0 | Ionic (Protein Cationic) |
O1N | OG1 | THR- 191 | 3.02 | 158.85 | H-Bond (Protein Donor) |
O1N | N | THR- 191 | 3 | 171.48 | H-Bond (Protein Donor) |
C5D | CG2 | THR- 191 | 4.4 | 0 | Hydrophobic |
O3B | OD2 | ASP- 210 | 2.75 | 158.38 | H-Bond (Ligand Donor) |
O2B | OD2 | ASP- 210 | 3.06 | 133.52 | H-Bond (Ligand Donor) |
C2B | CD2 | TYR- 212 | 4.26 | 0 | Hydrophobic |
C1B | CB | CYS- 243 | 4.07 | 0 | Hydrophobic |
C3D | CB | ASN- 244 | 4.43 | 0 | Hydrophobic |
N7A | ND2 | ASN- 246 | 3.16 | 126.9 | H-Bond (Protein Donor) |
N7N | O | ALA- 270 | 3.31 | 169.39 | H-Bond (Ligand Donor) |
C4D | CB | ALA- 271 | 4.24 | 0 | Hydrophobic |
N7N | OD2 | ASP- 296 | 2.82 | 147.38 | H-Bond (Ligand Donor) |
C4N | CB | TRP- 324 | 3.85 | 0 | Hydrophobic |
O2D | O | HOH- 515 | 3.07 | 179.97 | H-Bond (Protein Donor) |