2.140 Å
X-ray
2016-02-18
Name: | Putative dehydrogenase |
---|---|
ID: | R4SNK4_AMYOR |
AC: | R4SNK4 |
Organism: | Amycolatopsis orientalis HCCB10007 |
Reign: | Bacteria |
TaxID: | 1156913 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 96 % |
B | 4 % |
B-Factor: | 32.709 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.365 | 722.250 |
% Hydrophobic | % Polar |
---|---|
48.60 | 51.40 |
According to VolSite |
HET Code: | NAP |
---|---|
Formula: | C21H25N7O17P3 |
Molecular weight: | 740.381 g/mol |
DrugBank ID: | DB03461 |
Buried Surface Area: | 51.43 % |
Polar Surface area: | 405.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 21 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 4 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
-22.351 | 1.79155 | 33.9889 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | LEU- 13 | 3.43 | 137.79 | H-Bond (Protein Donor) |
O1N | N | MET- 16 | 3.49 | 155.97 | H-Bond (Protein Donor) |
O2N | N | MET- 16 | 3.21 | 132.05 | H-Bond (Protein Donor) |
O3X | ND2 | ASN- 35 | 3.2 | 154.62 | H-Bond (Protein Donor) |
O1X | CZ | ARG- 36 | 3.97 | 0 | Ionic (Protein Cationic) |
O1X | N | SER- 37 | 2.72 | 145.8 | H-Bond (Protein Donor) |
O1X | OG | SER- 37 | 2.89 | 143.47 | H-Bond (Protein Donor) |
O3X | NZ | LYS- 40 | 2.59 | 143.71 | H-Bond (Protein Donor) |
O3X | NZ | LYS- 40 | 2.59 | 0 | Ionic (Protein Cationic) |
C4B | CD2 | LEU- 69 | 4.25 | 0 | Hydrophobic |
C1B | CD2 | LEU- 69 | 3.7 | 0 | Hydrophobic |
O4B | N | ALA- 70 | 2.97 | 122.25 | H-Bond (Protein Donor) |