2.140 Å
X-ray
2016-02-18
| Name: | Putative dehydrogenase |
|---|---|
| ID: | R4SNK4_AMYOR |
| AC: | R4SNK4 |
| Organism: | Amycolatopsis orientalis HCCB10007 |
| Reign: | Bacteria |
| TaxID: | 1156913 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 96 % |
| B | 4 % |
| B-Factor: | 32.709 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.365 | 722.250 |
| % Hydrophobic | % Polar |
|---|---|
| 48.60 | 51.40 |
| According to VolSite | |

| HET Code: | NAP |
|---|---|
| Formula: | C21H25N7O17P3 |
| Molecular weight: | 740.381 g/mol |
| DrugBank ID: | DB03461 |
| Buried Surface Area: | 51.43 % |
| Polar Surface area: | 405.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 21 |
| H-Bond Donors: | 5 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 4 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 13 |
| X | Y | Z |
|---|---|---|
| -22.351 | 1.79155 | 33.9889 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3B | N | LEU- 13 | 3.43 | 137.79 | H-Bond (Protein Donor) |
| O1N | N | MET- 16 | 3.49 | 155.97 | H-Bond (Protein Donor) |
| O2N | N | MET- 16 | 3.21 | 132.05 | H-Bond (Protein Donor) |
| O3X | ND2 | ASN- 35 | 3.2 | 154.62 | H-Bond (Protein Donor) |
| O1X | CZ | ARG- 36 | 3.97 | 0 | Ionic (Protein Cationic) |
| O1X | N | SER- 37 | 2.72 | 145.8 | H-Bond (Protein Donor) |
| O1X | OG | SER- 37 | 2.89 | 143.47 | H-Bond (Protein Donor) |
| O3X | NZ | LYS- 40 | 2.59 | 143.71 | H-Bond (Protein Donor) |
| O3X | NZ | LYS- 40 | 2.59 | 0 | Ionic (Protein Cationic) |
| C4B | CD2 | LEU- 69 | 4.25 | 0 | Hydrophobic |
| C1B | CD2 | LEU- 69 | 3.7 | 0 | Hydrophobic |
| O4B | N | ALA- 70 | 2.97 | 122.25 | H-Bond (Protein Donor) |