scPDB - 5adh entry

Protein Data Bank Entry:

PDB ID : 5adh

Resolution :2.900 Å

Experimental Method : X-ray

Deposition Date : 1984-01-16

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Alcohol dehydrogenase E chain
ID:	ADH1E_HORSE
AC:	P00327
Organism:	Equus caballus
Reign:	Eukaryota
TaxID:	9796
EC Number:	1.1.1.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	19.000
Number of residues:	37
Including
Standard Amino Acids:	36
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.271	1107.000

% Hydrophobic	% Polar
43.90	56.10
According to VolSite

Ligand :

HET Code:	APR
Formula:	C15H21N5O14P2
Molecular weight:	557.300 g/mol
DrugBank ID:	-
Buried Surface Area:	47.31 %
Polar Surface area:	316.8 Å2

Number of
H-Bond Acceptors:	18
H-Bond Donors:	6
Rings:	4
Aromatic rings:	2
Anionic atoms:	2
Cationic atoms:	0
Rule of Five Violation:	3
Rotatable Bonds:	9

Mass center Coordinates

X	Y	Z
13.1318	6.53322	30.4763

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O1A	CZ	ARG- 47	3.68	0	Ionic (Protein Cationic)	false
C5D	CG	ARG- 47	3.83	0	Hydrophobic	false
C3D	CG	ARG- 47	4.42	0	Hydrophobic	false
O3'	OD2	ASP- 223	3.07	150.85	H-Bond (Ligand Donor)	false
O3'	NZ	LYS- 228	3.12	150.88	H-Bond (Protein Donor)	false
C1'	CG2	ILE- 269	4.16	0	Hydrophobic	false
C5'	CG2	ILE- 269	3.95	0	Hydrophobic	false
O3D	O	ILE- 269	2.7	164.39	H-Bond (Ligand Donor)	false
O1B	O	HOH- 388	2.8	180	H-Bond (Protein Donor)	false