2.000 Å
X-ray
2006-06-26
Name: | Mevalonate kinase |
---|---|
ID: | Q4Q6K7_LEIMA |
AC: | Q4Q6K7 |
Organism: | Leishmania major |
Reign: | Eukaryota |
TaxID: | 5664 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 22.786 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.837 | 894.375 |
% Hydrophobic | % Polar |
---|---|
32.83 | 67.17 |
According to VolSite |
HET Code: | MEV |
---|---|
Formula: | C6H11O4 |
Molecular weight: | 147.149 g/mol |
DrugBank ID: | DB03518 |
Buried Surface Area: | 66.5 % |
Polar Surface area: | 80.59 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
13.8432 | -8.2835 | 13.9299 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2 | CD1 | ILE- 20 | 3.81 | 0 | Hydrophobic |
C2 | CB | GLU- 24 | 4.29 | 0 | Hydrophobic |
C6 | CB | GLU- 24 | 4.48 | 0 | Hydrophobic |
O7 | N | HIS- 25 | 2.73 | 171.62 | H-Bond (Protein Donor) |
C6 | CB | HIS- 25 | 4.4 | 0 | Hydrophobic |
C4 | CG2 | VAL- 28 | 3.9 | 0 | Hydrophobic |
O3 | OH | TYR- 167 | 3.45 | 127.27 | H-Bond (Protein Donor) |
O4 | OH | TYR- 167 | 2.7 | 175.49 | H-Bond (Protein Donor) |
C8 | CG2 | THR- 198 | 4.06 | 0 | Hydrophobic |
C4 | CG2 | THR- 198 | 4.34 | 0 | Hydrophobic |
C4 | CG2 | VAL- 202 | 4.16 | 0 | Hydrophobic |
C6 | CG2 | VAL- 202 | 3.88 | 0 | Hydrophobic |
O8 | O | HOH- 1138 | 2.99 | 146.81 | H-Bond (Ligand Donor) |