2.000 Å
X-ray
2006-06-26
| Name: | Mevalonate kinase |
|---|---|
| ID: | Q4Q6K7_LEIMA |
| AC: | Q4Q6K7 |
| Organism: | Leishmania major |
| Reign: | Eukaryota |
| TaxID: | 5664 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 22.786 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 20 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.837 | 894.375 |
| % Hydrophobic | % Polar |
|---|---|
| 32.83 | 67.17 |
| According to VolSite | |

| HET Code: | MEV |
|---|---|
| Formula: | C6H11O4 |
| Molecular weight: | 147.149 g/mol |
| DrugBank ID: | DB03518 |
| Buried Surface Area: | 66.5 % |
| Polar Surface area: | 80.59 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 13.8432 | -8.2835 | 13.9299 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C2 | CD1 | ILE- 20 | 3.81 | 0 | Hydrophobic |
| C2 | CB | GLU- 24 | 4.29 | 0 | Hydrophobic |
| C6 | CB | GLU- 24 | 4.48 | 0 | Hydrophobic |
| O7 | N | HIS- 25 | 2.73 | 171.62 | H-Bond (Protein Donor) |
| C6 | CB | HIS- 25 | 4.4 | 0 | Hydrophobic |
| C4 | CG2 | VAL- 28 | 3.9 | 0 | Hydrophobic |
| O3 | OH | TYR- 167 | 3.45 | 127.27 | H-Bond (Protein Donor) |
| O4 | OH | TYR- 167 | 2.7 | 175.49 | H-Bond (Protein Donor) |
| C8 | CG2 | THR- 198 | 4.06 | 0 | Hydrophobic |
| C4 | CG2 | THR- 198 | 4.34 | 0 | Hydrophobic |
| C4 | CG2 | VAL- 202 | 4.16 | 0 | Hydrophobic |
| C6 | CG2 | VAL- 202 | 3.88 | 0 | Hydrophobic |
| O8 | O | HOH- 1138 | 2.99 | 146.81 | H-Bond (Ligand Donor) |