2.700 Å
X-ray
2005-04-20
| Name: | Tyrosine-protein kinase Lck |
|---|---|
| ID: | LCK_HUMAN |
| AC: | P06239 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.10.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 85 % |
| C | 6 % |
| E | 9 % |
| B-Factor: | 64.680 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.677 | 587.250 |
| % Hydrophobic | % Polar |
|---|---|
| 41.95 | 58.05 |
| According to VolSite | |

| HET Code: | ASP_ASP_TYR_VAL_PTR |
|---|---|
| Formula: | C31H37N5O14P |
| Molecular weight: | 734.624 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 37.98 % |
| Polar Surface area: | 343.83 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 6 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 20 |
| X | Y | Z |
|---|---|---|
| 61.0861 | 29.4076 | 109.787 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CE2 | CB | SER- 75 | 4.06 | 0 | Hydrophobic |
| O3P | NH1 | ARG- 134 | 3.14 | 172.37 | H-Bond (Protein Donor) |
| O3P | NH2 | ARG- 154 | 2.72 | 145.25 | H-Bond (Protein Donor) |
| O3P | CZ | ARG- 154 | 3.64 | 0 | Ionic (Protein Cationic) |
| O1P | N | GLU- 157 | 2.91 | 163.58 | H-Bond (Protein Donor) |
| CE2 | CB | SER- 164 | 4.41 | 0 | Hydrophobic |
| OH | OG | SER- 164 | 2.94 | 138.8 | H-Bond (Protein Donor) |
| CB | CB | LYS- 179 | 4.48 | 0 | Hydrophobic |
| N | O | HIS- 180 | 3.06 | 170.7 | H-Bond (Ligand Donor) |
| OD1 | N | HIS- 180 | 3.48 | 171.18 | H-Bond (Protein Donor) |
| CB | CE2 | TYR- 181 | 4.13 | 0 | Hydrophobic |
| CD2 | CB | LYS- 182 | 3.47 | 0 | Hydrophobic |
| CE2 | CG | LYS- 182 | 3.62 | 0 | Hydrophobic |
| CG1 | CG2 | ILE- 193 | 4.07 | 0 | Hydrophobic |
| CG1 | CB | SER- 194 | 3.42 | 0 | Hydrophobic |