1.950 Å
X-ray
2012-07-12
| Name: | Tetracycline repressor protein class D |
|---|---|
| ID: | TETR4_ECOLX |
| AC: | P0ACT4 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 562 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 52.727 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.185 | 695.250 |
| % Hydrophobic | % Polar |
|---|---|
| 38.83 | 61.17 |
| According to VolSite | |

| HET Code: | ITC |
|---|---|
| Formula: | C22H22ClN2O8 |
| Molecular weight: | 477.872 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.64 % |
| Polar Surface area: | 174.31 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 3 |
| Rings: | 4 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 21.6703 | 36.4149 | 34.8826 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | OG | SER- 67 | 2.84 | 155.67 | H-Bond (Protein Donor) |
| O3 | ND2 | ASN- 82 | 2.82 | 156.91 | H-Bond (Protein Donor) |
| N4 | OD1 | ASN- 82 | 2.54 | 145.14 | H-Bond (Ligand Donor) |
| O10 | NH1 | ARG- 104 | 2.77 | 147.13 | H-Bond (Protein Donor) |
| O2' | NE2 | GLN- 116 | 3.35 | 125.68 | H-Bond (Protein Donor) |
| O3 | NE2 | GLN- 116 | 2.66 | 159.9 | H-Bond (Protein Donor) |
| C6' | CD1 | LEU- 131 | 4.08 | 0 | Hydrophobic |
| C6' | CG2 | ILE- 134 | 3.25 | 0 | Hydrophobic |
| C6' | CB | SER- 135 | 4.37 | 0 | Hydrophobic |
| CL7 | CB | SER- 135 | 3.72 | 0 | Hydrophobic |
| C4A | CB | SER- 138 | 4.41 | 0 | Hydrophobic |
| C5A | CB | SER- 138 | 4.39 | 0 | Hydrophobic |
| CL7 | CB | SER- 138 | 3.79 | 0 | Hydrophobic |