1.950 Å
X-ray
2012-07-12
Name: | Tetracycline repressor protein class D |
---|---|
ID: | TETR4_ECOLX |
AC: | P0ACT4 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 562 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 52.727 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.185 | 695.250 |
% Hydrophobic | % Polar |
---|---|
38.83 | 61.17 |
According to VolSite |
HET Code: | ITC |
---|---|
Formula: | C22H22ClN2O8 |
Molecular weight: | 477.872 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 54.64 % |
Polar Surface area: | 174.31 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 4 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
21.6703 | 36.4149 | 34.8826 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | OG | SER- 67 | 2.84 | 155.67 | H-Bond (Protein Donor) |
O3 | ND2 | ASN- 82 | 2.82 | 156.91 | H-Bond (Protein Donor) |
N4 | OD1 | ASN- 82 | 2.54 | 145.14 | H-Bond (Ligand Donor) |
O10 | NH1 | ARG- 104 | 2.77 | 147.13 | H-Bond (Protein Donor) |
O2' | NE2 | GLN- 116 | 3.35 | 125.68 | H-Bond (Protein Donor) |
O3 | NE2 | GLN- 116 | 2.66 | 159.9 | H-Bond (Protein Donor) |
C6' | CD1 | LEU- 131 | 4.08 | 0 | Hydrophobic |
C6' | CG2 | ILE- 134 | 3.25 | 0 | Hydrophobic |
C6' | CB | SER- 135 | 4.37 | 0 | Hydrophobic |
CL7 | CB | SER- 135 | 3.72 | 0 | Hydrophobic |
C4A | CB | SER- 138 | 4.41 | 0 | Hydrophobic |
C5A | CB | SER- 138 | 4.39 | 0 | Hydrophobic |
CL7 | CB | SER- 138 | 3.79 | 0 | Hydrophobic |