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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4b1rITCTetracycline repressor protein class D

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4b1rITCTetracycline repressor protein class D/1.000
4b3aTACTetracycline repressor protein class D/0.581
5fkmTDCTetracycline repressor protein class D/0.577
2xpvMIYTetracycline repressor protein class D/0.566
2x9dITCTetracycline repressor protein class D/0.564
5fklTDCTetracycline repressor protein class D/0.561
1orkATCTetracycline repressor protein class D/0.559
4auxXTCTetracycline repressor protein class D/0.551
2vkeTACTetracycline repressor protein class D/0.546
2xpwOTCTetracycline repressor protein class D/0.526
2o7oDXTTetracycline repressor protein class D/0.525
2xpuTDCTetracycline repressor protein class D/0.522
2fj1CTCTetracycline repressor protein class D/0.521
4abzT1CTetracycline repressor protein class D/0.519
4v2gITCTetracycline repressor protein class D/0.517
2trtTACTetracycline repressor protein class D/0.503
2tctCTCTetracycline repressor protein class D/0.492
2x6o2TCTetracycline repressor protein class D/0.492
2xrlDXTTetracycline repressor protein class D/0.487
2xb5I7TTetracycline repressor protein class D/0.458
4d7mTDCTetracycline repressor protein class D/0.448
4q71FADBifunctional protein PutA/0.447
5fkoTDCTetracycline repressor protein class D/0.445
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.444
1w6hTITPlasmepsin-23.4.23.390.441
2xviFADPutative flavin-containing monooxygenase/0.440