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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gap FAD Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4gap FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 1.223
4g6h FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 1.070
4gav FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 1.053
4g9k FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 1.040
4g73 FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 1.012
4g74 FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.988
4g6g FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.943
3ics FADCoenzyme A disulfide reductase / 0.820
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.808
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.789
1tde FADThioredoxin reductase 1.8.1.9 0.789
3icr FADCoenzyme A disulfide reductase / 0.789
3nta FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.784
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.780
1f8w FADNADH peroxidase 1.11.1.1 0.779
1fl2 FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.778
4em3 FADCoenzyme A disulfide reductase / 0.776
4ocg FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.776
4nev FADTrypanothione reductase / 0.767
1nhs FADNADH peroxidase 1.11.1.1 0.766
1npx FADNADH peroxidase 1.11.1.1 0.766
2npx FADNADH peroxidase 1.11.1.1 0.766
2whd FADThioredoxin reductase / 0.765
3cgd FADCoenzyme A disulfide reductase / 0.764
2tpr FADTrypanothione reductase 1.8.1.12 0.761
4fx9 FADCoenzyme A disulfide reductase 1.8.1.14 0.761
3cgc FADCoenzyme A disulfide reductase / 0.760
3ntd FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.760
2w0h FADTrypanothione reductase / 0.758
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.754
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.753
2q7v FADThioredoxin reductase / 0.752
4em4 FADCoenzyme A disulfide reductase / 0.752
3cge FADCoenzyme A disulfide reductase / 0.751
1tdf FADThioredoxin reductase 1.8.1.9 0.750
4hb9 FADUncharacterized protein / 0.750
2bab FADPutative aminooxidase / 0.749
4gcm FADThioredoxin reductase 1.8.1.9 0.748
4o5u FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.745
4j34 FADKynurenine 3-monooxygenase / 0.742
3cgb FADCoenzyme A disulfide reductase / 0.741
2jb1 FADL-amino acid oxidase / 0.740
2jb2 FADL-amino acid oxidase / 0.740
2x3n FADProbable FAD-dependent monooxygenase / 0.739
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.739
1v59 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.737
2q0k FADThioredoxin reductase 1.8.1.9 0.737
2yqu FADDihydrolipoyl dehydrogenase / 0.737
4ykf FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.737
1nhr FADNADH peroxidase 1.11.1.1 0.736
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.735
3ish FADThioredoxin reductase 1.8.1.9 0.733
4fwe FADLysine-specific histone demethylase 1B 1 0.733
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.733
2vou FAD2,6-dihydroxypyridine 3-monooxygenase 1.14.13.10 0.732
3qfa FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.732
3t37 FADPyridoxine 4-oxidase / 0.732
4eqr FADCoenzyme A disulfide reductase / 0.732
4eqw FADCoenzyme A disulfide reductase / 0.732
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.731
4qi7 FADCellobiose dehydrogenase / 0.731
2hqm FADGlutathione reductase 1.8.1.7 0.730
1trb FADThioredoxin reductase 1.8.1.9 0.728
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.728
4ykg FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.728
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.728
3ict FADCoenzyme A disulfide reductase / 0.727
2cdu FADNADH oxidase / 0.726
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.726
4nte FADDepH / 0.726
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.726
2b9w FADPutative aminooxidase / 0.724
2wow FADTrypanothione reductase / 0.724
2yg4 FADPutrescine oxidase / 0.724
1fec FADTrypanothione reductase 1.8.1.12 0.723
3qvp FADGlucose oxidase 1.1.3.4 0.723
3qvr FADGlucose oxidase 1.1.3.4 0.723
4wct FADFructosyl amine:oxygen oxidoreductase / 0.723
3cnt FADPolyamine oxidase FMS1 / 0.720
3rha FDAPutrescine oxidase / 0.720
4ccr FADThioredoxin reductase / 0.720
1yqz FADCoenzyme A disulfide reductase / 0.717
3f8d FADNADH oxidase/thioredoxin reductase / 0.717
2bac FADPutative aminooxidase / 0.716
3r9u FADThioredoxin reductase / 0.716
4qi5 FADCellobiose dehydrogenase / 0.716
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.714
1q1w FADPutidaredoxin reductase 1.18.1.5 0.714
4emj FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.714
4dna FADProbable glutathione reductase / 0.712
4eqx FADCoenzyme A disulfide reductase / 0.712
4j31 FADKynurenine 3-monooxygenase / 0.712
4j33 FADKynurenine 3-monooxygenase / 0.712
4z26 FADPutative GMC-type oxidoreductase R135 1 0.711
5j60 FADThioredoxin reductase / 0.711
1joa FADNADH peroxidase 1.11.1.1 0.710
3klj FADNADH-rubredoxin oxidoreductase 1.18.1.1 0.710
4nwz FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.710
2wba FADTrypanothione reductase 1.8.1.12 0.709
2yg6 FADPutrescine oxidase / 0.709
1ger FADGlutathione reductase 1.8.1.7 0.707
1zk7 FADMercuric reductase 1.16.1.1 0.707
4i58 FADCyclohexylamine Oxidase / 0.707
4opl FDAConserved Archaeal protein / 0.707
1zx9 FADMercuric reductase 1.16.1.1 0.706
2eq7 FADDihydrolipoyl dehydrogenase / 0.706
2yg3 FADPutrescine oxidase / 0.706
3urh FADDihydrolipoyl dehydrogenase / 0.706
1get FADGlutathione reductase 1.8.1.7 0.705
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.705
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.705
4bjz FADProbable salicylate monooxygenase / 0.704
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.704
1f3p FADFerredoxin reductase / 0.702
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.702
1nhp FADNADH peroxidase 1.11.1.1 0.702
4la1 FADThioredoxin glutathione reductase / 0.702
4opi FDAConserved Archaeal protein / 0.702
1ryi FADGlycine oxidase 1.4.3.19 0.699
2zbw FADFerredoxin--NADP reductase / 0.699
4dsg FADUncharacterized protein / 0.699
2vvl FADMonoamine oxidase N 1.4.3.4 0.698
4emw FADCoenzyme A disulfide reductase / 0.698
4jq9 FADDihydrolipoyl dehydrogenase / 0.698
1zy8 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.697
3m13 FADMonomeric sarcosine oxidase 1.5.3.1 0.697
4yry FADGlutamate synthase, beta subunit / 0.697
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.696
3atr FDAConserved Archaeal protein / 0.695
4opu FDAConserved Archaeal protein / 0.695
1rsg FADPolyamine oxidase FMS1 / 0.694
2gr0 FADFerredoxin reductase / 0.694
3dgh FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.693
4j36 FADKynurenine 3-monooxygenase / 0.693
4opt FDAConserved Archaeal protein / 0.693
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.692
2eq6 FADDihydrolipoyl dehydrogenase / 0.692
3fbs FADOxidoreductase / 0.692
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.691
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.691
3dh9 FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.691
4eqs FADCoenzyme A disulfide reductase / 0.691
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.690
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.689
4b1b FADThioredoxin reductase 1.8.1.9 0.689
4gus FADLysine-specific histone demethylase 1B 1 0.689
4opc FDAConserved Archaeal protein / 0.689
2j3n FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.688
4x4j FADPutative oxygenase / 0.688
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.688
1cf3 FADGlucose oxidase 1.1.3.4 0.687
1gpe FADGlucose oxidase 1.1.3.4 0.687
2a8x FADDihydrolipoyl dehydrogenase 1.8.1.4 0.687
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.687
4qi4 FADCellobiose dehydrogenase / 0.686
1c0k FADD-amino-acid oxidase 1.4.3.3 0.685
1geu FADGlutathione reductase 1.8.1.7 0.684
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.684
4cbq FADThioredoxin reductase / 0.684
4ccq FADThioredoxin reductase / 0.684
1xdi FADNAD(P)H dehydrogenase (quinone) / 0.683
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.681
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.681
5hxw FADL-amino acid deaminase / 0.681
1d7l RFLp-hydroxybenzoate hydroxylase / 0.680
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.680
1q1r FADPutidaredoxin reductase 1.18.1.5 0.679
2jk6 FADTrypanothione reductase / 0.679
1ojt FADDihydrolipoyl dehydrogenase / 0.678
4cnj FADL-amino acid oxidase / 0.678
1bzl FADTrypanothione reductase 1.8.1.12 0.677
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.677
3utg FDAUDP-galactopyranose mutase / 0.677
4jn9 FADDepH / 0.677
1kif FADD-amino-acid oxidase 1.4.3.3 0.676
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.676
2xdo FADTetX family tetracycline inactivation enzyme / 0.676
3gd3 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.676
2gqw FADFerredoxin reductase / 0.675
2rab FADGlutathione amide reductase / 0.675
3all FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.675
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.675
4a99 FADTetX family tetracycline inactivation enzyme / 0.675
4ntd FADThioredoxin reductase / 0.675
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.675
1feb FADTrypanothione reductase 1.8.1.12 0.674
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.674
4mo2 FADUDP-galactopyranose mutase / 0.674
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.673
3ept FDAPutative FAD-monooxygenase / 0.673
2du8 FADD-amino-acid oxidase 1.4.3.3 0.672
3atq FDAConserved Archaeal protein / 0.672
3cty FADProbable thioredoxin reductase / 0.672
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.672
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.672
3fg2 FADPutative rubredoxin reductase / 0.672
3q9t FAYUncharacterized protein / 0.672
4cnk FADL-amino acid oxidase / 0.672
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.671
3rp8 FADFAD-dependent urate hydroxylase / 0.671
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.671
4ysh FADGlycine oxidase / 0.671
1bwc FADGlutathione reductase, mitochondrial 1.8.1.7 0.670
3dgz FADThioredoxin reductase 2, mitochondrial 1.8.1.9 0.670
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.669
2gmj FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.669
2zz0 FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.669
1gv4 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.668
3gmb FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.667
4a5l FADThioredoxin reductase / 0.667
4a65 FADThioredoxin reductase / 0.667
3hdy FADUDP-galactopyranose mutase / 0.666
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.666
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.665
4bk3 FADProbable salicylate monooxygenase / 0.665
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.665
4mo2 FDAUDP-galactopyranose mutase / 0.665
1gal FADGlucose oxidase 1.1.3.4 0.663
2e1m FADL-glutamate oxidase / 0.663
4u8n FDAUDP-galactopyranose mutase / 0.663
1ges FADGlutathione reductase 1.8.1.7 0.662
1h6v FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.662
2qa1 FADPgaE / 0.662
2yg5 FADPutrescine oxidase / 0.662
3ef6 FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.662
3k4c FADPyranose 2-oxidase / 0.662
4opg FDAConserved Archaeal protein / 0.662
5eow FAD6-hydroxynicotinate 3-monooxygenase 1.14.13.114 0.661
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.660
3p9u FADTetX family tetracycline inactivation enzyme / 0.660
2gr3 FADFerredoxin reductase / 0.659
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.659
4h4p FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
1c0l FADD-amino-acid oxidase 1.4.3.3 0.658
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.658
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.658
2ign FADPyranose 2-oxidase / 0.657
3lad FADDihydrolipoyl dehydrogenase / 0.657
3znp FADD-amino-acid oxidase 1.4.3.3 0.657
4yjd FADD-amino-acid oxidase 1.4.3.3 0.657
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.656
3k4n FADPyranose 2-oxidase / 0.656
4mih FADPyranose 2-oxidase 1.1.3.10 0.655
1yy5 FADPolyamine oxidase FMS1 / 0.654
4guv FADTetX family tetracycline inactivation enzyme / 0.654
4xwr FADCholesterol oxidase 1.1.3.6 0.654
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.653
2eq9 FADDihydrolipoyl dehydrogenase / 0.653
2qcu FADAerobic glycerol-3-phosphate dehydrogenase 1.1.5.3 0.653
2r9z FADGlutathione amide reductase / 0.653
2x8h FADThioredoxin glutathione reductase / 0.652
1k0l FADp-hydroxybenzoate hydroxylase / 0.651
2c4c FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.651
3he3 FADUDP-galactopyranose mutase / 0.651
3int FDAUDP-galactopyranose mutase 5.4.99.9 0.651
3lsh FADPyranose 2-oxidase / 0.651
4jnq FDAThioredoxin reductase / 0.651
4u8i FDAUDP-galactopyranose mutase / 0.651
3b6d FAECholesterol oxidase 1.1.3.6 0.650
3ean FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.650
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.650
3pl8 FADPyranose 2-oxidase / 0.650
4ntc FADThioredoxin reductase gliT / 0.650