scPDB - 3ept entry

Protein Data Bank Entry:

PDB ID : 3ept

Resolution :2.970 Å

Experimental Method : X-ray

Deposition Date : 2008-09-30

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Putative FAD-monooxygenase
ID:	Q8KI25_NOCAE
AC:	Q8KI25
Organism:	Lechevalieria aerocolonigenes
Reign:	Bacteria
TaxID:	68170
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	40.099
Number of residues:	56
Including
Standard Amino Acids:	55
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.939	1032.750

% Hydrophobic	% Polar
49.02	50.98
According to VolSite

Ligand :

HET Code:	FDA
Formula:	C27H33N9O15P2
Molecular weight:	785.550 g/mol
DrugBank ID:	-
Buried Surface Area:	66.04 %
Polar Surface area:	381.04 Å2

Number of
H-Bond Acceptors:	21
H-Bond Donors:	9
Rings:	6
Aromatic rings:	3
Anionic atoms:	2
Cationic atoms:	0
Rule of Five Violation:	3
Rotatable Bonds:	13

Mass center Coordinates

X	Y	Z
-6.87485	27.3885	38.6971

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C5'	CG2	VAL- 17	4.02	0	Hydrophobic	false
O2P	N	VAL- 17	2.97	133.95	H-Bond (Protein Donor)	false
O3B	OE1	GLU- 36	2.64	169.08	H-Bond (Ligand Donor)	false
O2B	OE2	GLU- 36	2.59	174.55	H-Bond (Ligand Donor)	false
O2B	NE2	GLN- 37	3.04	164.2	H-Bond (Protein Donor)	false
N3A	N	GLN- 37	3.14	150.84	H-Bond (Protein Donor)	false
O2A	NH2	ARG- 46	3.15	155.57	H-Bond (Protein Donor)	false
C6	CB	ARG- 46	4.29	0	Hydrophobic	false
C9A	CB	ARG- 46	4.32	0	Hydrophobic	false
C7	CG	ARG- 46	4	0	Hydrophobic	false
C8	CD	ARG- 46	3.49	0	Hydrophobic	false
C2'	CG1	VAL- 47	3.64	0	Hydrophobic	false
O4	N	GLY- 48	2.87	169.33	H-Bond (Protein Donor)	false
N3	O	THR- 49	3.21	168.63	H-Bond (Ligand Donor)	false
O4	N	THR- 49	2.92	172.22	H-Bond (Protein Donor)	false
N6A	O	LEU- 138	3.16	171.89	H-Bond (Ligand Donor)	false
N1A	N	LEU- 138	2.94	167.62	H-Bond (Protein Donor)	false
C7M	CZ2	TRP- 276	4.3	0	Hydrophobic	false
C8M	CE3	TRP- 276	3.67	0	Hydrophobic	false
O3'	OD1	ASP- 296	2.77	162.7	H-Bond (Ligand Donor)	false
C5'	CB	ASP- 296	4.2	0	Hydrophobic	false
O1P	N	ASP- 296	3.38	145.89	H-Bond (Protein Donor)	false
C9	CB	PRO- 303	3.89	0	Hydrophobic	false
N1	N	MET- 309	3.14	173.19	H-Bond (Protein Donor)	false
C4'	CB	MET- 309	4.18	0	Hydrophobic	false
O2	N	ASN- 310	3.21	153.04	H-Bond (Protein Donor)	false
O2P	O	HOH- 739	2.82	179.96	H-Bond (Protein Donor)	false