2.500 Å
X-ray
2007-09-14
Name: | Glutathione amide reductase |
---|---|
ID: | GASHR_MARGR |
AC: | D0VWY5 |
Organism: | Marichromatium gracile |
Reign: | Bacteria |
TaxID: | 1048 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 95 % |
B | 5 % |
B-Factor: | 35.455 |
---|---|
Number of residues: | 40 |
Including | |
Standard Amino Acids: | 39 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.693 | 897.750 |
% Hydrophobic | % Polar |
---|---|
42.11 | 57.89 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 63.7 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
18.6302 | 38.6215 | 115.449 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | ALA- 174 | 2.95 | 150.12 | H-Bond (Protein Donor) |
C3N | CD1 | TYR- 176 | 3.1 | 0 | Hydrophobic |
C2D | CD2 | TYR- 176 | 3.81 | 0 | Hydrophobic |
C5N | CB | TYR- 176 | 3.32 | 0 | Hydrophobic |
O1N | N | ILE- 177 | 3.4 | 146.74 | H-Bond (Protein Donor) |
C5D | CD1 | ILE- 177 | 4.14 | 0 | Hydrophobic |
C5N | CG1 | ILE- 177 | 3.34 | 0 | Hydrophobic |
N7N | OE2 | GLU- 180 | 2.73 | 141.53 | H-Bond (Ligand Donor) |
C2B | CB | LEU- 197 | 3.95 | 0 | Hydrophobic |
O2B | N | LEU- 197 | 2.75 | 152.69 | H-Bond (Protein Donor) |
O3B | OE1 | GLU- 198 | 2.81 | 152.16 | H-Bond (Ligand Donor) |
O2B | OE1 | GLU- 198 | 2.98 | 152.61 | H-Bond (Ligand Donor) |
O2B | OE2 | GLU- 198 | 3.43 | 124.25 | H-Bond (Ligand Donor) |
N1A | N | VAL- 230 | 3.3 | 148.05 | H-Bond (Protein Donor) |
C1B | CG1 | VAL- 260 | 3.83 | 0 | Hydrophobic |
O2N | N | GLY- 261 | 3.31 | 128.32 | H-Bond (Protein Donor) |
C5D | CD | ARG- 262 | 3.86 | 0 | Hydrophobic |
C2D | CB | GLN- 308 | 4.25 | 0 | Hydrophobic |
N7N | O | VAL- 341 | 2.83 | 127.12 | H-Bond (Ligand Donor) |