Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rab NAD Glutathione amide reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rab NADGlutathione amide reductase / 1.051
1geu NADGlutathione reductase 1.8.1.7 0.714
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.702
2wow NDPTrypanothione reductase / 0.700
1get NAPGlutathione reductase 1.8.1.7 0.670
3cgd NADCoenzyme A disulfide reductase / 0.662
2ph5 NADHomospermidine synthase / 0.652