sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4dso | GSP | GTPase KRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4dso | GSP | GTPase KRas | / | 1.245 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.126 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.121 | |
| 4dlz | GNP | GTPase HRas | / | 1.103 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.090 | |
| 2rgc | GNP | GTPase HRas | / | 1.089 | |
| 4dlx | GNP | GTPase HRas | / | 1.088 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.073 | |
| 3ddc | GNP | GTPase HRas | / | 1.071 | |
| 3rs4 | GNP | GTPase HRas | / | 1.071 | |
| 3rs5 | GNP | GTPase HRas | / | 1.071 | |
| 4dlt | GNP | GTPase HRas | / | 1.071 | |
| 4dlv | GNP | GTPase HRas | / | 1.071 | |
| 3rs7 | GNP | GTPase HRas | / | 1.070 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.064 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.058 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.057 | |
| 3lbh | GNP | GTPase HRas | / | 1.056 | |
| 4nyj | GNP | GTPase HRas | / | 1.056 | |
| 4dls | GNP | GTPase HRas | / | 1.054 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.049 | |
| 2rge | GNP | GTPase HRas | / | 1.042 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.040 | |
| 3oiu | GNP | GTPase HRas | / | 1.040 | |
| 3lbi | GNP | GTPase HRas | / | 1.038 | |
| 3v4f | GNP | GTPase HRas | / | 1.038 | |
| 5b2z | GNP | GTPase HRas | / | 1.036 | |
| 4dlw | GNP | GTPase HRas | / | 1.035 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.035 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.035 | |
| 4xvq | GNP | GTPase HRas | / | 1.034 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.033 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.032 | |
| 3i3s | GNP | GTPase HRas | / | 1.032 | |
| 3k8y | GNP | GTPase HRas | / | 1.032 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.023 | |
| 2rgb | GNP | GTPase HRas | / | 1.019 | |
| 4nyi | GNP | GTPase HRas | / | 1.019 | |
| 4wa7 | GDP | GTPase KRas | / | 1.019 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.017 | |
| 4dsn | GCP | GTPase KRas | / | 1.015 | |
| 4dvg | GSP | Rho family GTPase | / | 1.015 | |
| 2c5l | GTP | GTPase HRas | / | 1.014 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.013 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 1.012 | |
| 4dsu | GDP | GTPase KRas | / | 1.010 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.009 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 1.009 | |
| 4k81 | GTP | GTPase HRas | / | 1.009 | |
| 2rgg | GNP | GTPase HRas | / | 1.008 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.007 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.003 | |
| 3tgp | GNP | GTPase HRas | / | 1.002 | |
| 2ce2 | GDP | GTPase HRas | / | 1.001 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.997 | |
| 3lbn | GNP | GTPase HRas | / | 0.997 | |
| 4epx | GDP | GTPase KRas | / | 0.996 | |
| 3k9l | GNP | GTPase HRas | / | 0.992 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.988 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.986 | |
| 4l9w | GNP | GTPase HRas | / | 0.984 | |
| 3oiv | GNP | GTPase HRas | / | 0.982 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.982 | |
| 3l8y | GNP | GTPase HRas | / | 0.981 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.980 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.977 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.977 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.976 | |
| 3rs0 | GNP | GTPase HRas | / | 0.975 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.974 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.973 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.971 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.970 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.967 | |
| 3rsl | GNP | GTPase HRas | / | 0.966 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.965 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.965 | |
| 4l9s | GDP | GTPase HRas | / | 0.965 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.964 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.964 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.964 | |
| 4ql3 | GDP | GTPase KRas | / | 0.964 | |
| 4q02 | GDP | GTPase KRas | / | 0.963 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.961 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.958 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.956 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.956 | |
| 4l8g | GDP | GTPase KRas | / | 0.956 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.955 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.952 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.952 | |
| 3oiw | GNP | GTPase HRas | / | 0.951 | |
| 4q03 | GDP | GTPase KRas | / | 0.951 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.950 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.949 | |
| 4tq9 | GDP | GTPase KRas | / | 0.948 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.942 | |
| 3kud | GDP | GTPase HRas | / | 0.939 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.938 | |
| 4mit | GTP | Rho-related protein racC | / | 0.936 | |
| 2cl6 | CAG | GTPase HRas | / | 0.935 | |
| 4g0n | GNP | GTPase HRas | / | 0.933 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.932 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.932 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.929 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.929 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.927 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.925 | |
| 4epw | GDP | GTPase KRas | / | 0.924 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.922 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.922 | |
| 4lv6 | GDP | GTPase KRas | / | 0.920 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.918 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.917 | |
| 3ref | GDP | Rho family GTPase | / | 0.917 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.917 | |
| 1lfd | GNP | GTPase HRas | / | 0.915 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.915 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.914 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.914 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.914 | |
| 4ldj | GDP | GTPase KRas | / | 0.914 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.913 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.912 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.911 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.911 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.911 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.910 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.906 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.906 | |
| 4xvr | GNP | GTPase HRas | / | 0.906 | |
| 4luc | GDP | GTPase KRas | / | 0.904 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.904 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.902 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.902 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.901 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.900 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.896 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.896 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.893 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.893 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.892 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.892 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.892 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.891 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.890 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.888 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.888 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.886 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.883 | |
| 4lpk | GDP | GTPase KRas | / | 0.883 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.883 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.881 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.879 | |
| 4obe | GDP | GTPase KRas | / | 0.879 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.878 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.877 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.876 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.876 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.875 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.874 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.874 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.873 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.872 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.870 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.868 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.861 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.861 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.859 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.859 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.856 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.855 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.854 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.852 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.852 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.850 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.850 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.849 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.848 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.838 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.838 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.832 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.832 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.830 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.828 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.828 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.827 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.826 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.826 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.825 | |
| 3ftq | GNP | Septin-2 | / | 0.825 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.823 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.823 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.821 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.821 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.820 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.819 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.819 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.817 | |
| 4lrw | GDP | GTPase KRas | / | 0.816 | |
| 4db1 | ANP | Myosin-7 | / | 0.812 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.812 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.811 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.810 | |
| 4yqf | GDP | Septin-9 | / | 0.810 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.808 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.808 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.808 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.808 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.807 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.806 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.806 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.806 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.806 | |
| 2fna | ADP | Uncharacterized protein | / | 0.805 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.805 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.804 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.803 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.803 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.803 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.801 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.801 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.800 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.800 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.799 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.799 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.798 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.798 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.798 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.798 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.797 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.796 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.795 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.795 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.794 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.794 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.793 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.792 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.791 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.791 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.791 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.791 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.791 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.789 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.789 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.789 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.789 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.788 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.788 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.786 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.786 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.786 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.786 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.786 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.784 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.783 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.783 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.782 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.781 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.780 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.780 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.780 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.779 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.779 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.778 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.777 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.777 | |
| 5bn3 | ADP | NEQ263 | / | 0.777 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.776 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.776 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.775 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.775 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.774 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.774 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.774 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.774 | |
| 2zts | ADP | Uncharacterized protein | / | 0.772 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.772 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.771 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.771 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.771 | |
| 4jlo | ADP | Adenylate kinase | / | 0.769 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.768 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.768 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.767 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.767 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.767 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.766 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.766 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.766 | |
| 1ake | AP5 | Adenylate kinase | / | 0.765 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.765 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.765 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.765 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.765 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.765 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.764 | |
| 4v02 | ATP | Site-determining protein | / | 0.764 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.763 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.763 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.763 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.762 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.762 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.760 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.759 | |
| 4jky | ADP | Adenylate kinase | / | 0.759 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.758 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.757 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.757 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.757 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.756 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 1xmv | ADP | Protein RecA | / | 0.755 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.755 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.755 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.755 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.754 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.754 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 3r9x | GNP | GTPase Era | / | 0.753 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.753 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.752 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.752 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.752 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.752 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.750 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.750 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.749 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.749 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.748 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.748 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.748 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.746 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.746 | |
| 5cyo | GDP | Septin-9 | / | 0.745 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.743 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.743 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.742 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.742 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.741 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.741 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.740 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.740 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.740 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.740 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.740 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.739 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.739 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.738 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 4jld | ADP | Adenylate kinase | / | 0.738 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.737 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.736 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.735 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.735 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.734 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 4ike | ADP | Adenylate kinase | / | 0.733 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.732 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.732 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.731 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.731 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.731 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.730 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.730 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.730 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.727 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.727 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.725 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.724 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 2osb | AP5 | Adenylate kinase | / | 0.723 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.722 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.722 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.722 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.721 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.720 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.720 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.720 | |
| 2qaj | AP5 | Adenylate kinase | / | 0.719 | |
| 4iei | ADP | Gene 2 protein | / | 0.719 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.718 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.717 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.717 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.714 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.713 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.713 | |
| 2uz3 | TTP | Thymidine kinase | / | 0.712 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.712 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.712 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.712 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.712 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.711 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.710 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.710 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.709 | |
| 1ank | ANP | Adenylate kinase | / | 0.708 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.708 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.704 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.704 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.704 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.702 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.702 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.702 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.701 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.701 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.701 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.699 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.699 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.699 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.699 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.699 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.698 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.698 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.698 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.697 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.695 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.693 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.693 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.692 | |
| 2ad5 | ADP | CTP synthase | / | 0.692 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.692 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.692 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.692 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.692 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.691 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.691 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.690 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.689 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.689 | |
| 2eck | ADP | Adenylate kinase | / | 0.689 | |
| 4xvu | ATP | ATPase GET3 | / | 0.689 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.688 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.688 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.688 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.688 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.687 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.687 | |
| 2c98 | ADP | Psp operon transcriptional activator | / | 0.687 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.687 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.687 | |
| 5dac | AGS | Uncharacterized protein | / | 0.686 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.684 | |
| 1xbt | TTP | Thymidine kinase, cytosolic | 2.7.1.21 | 0.682 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.681 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.681 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.681 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.679 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.679 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.678 | |
| 5ftf | ADP | TPR domain protein | / | 0.677 | |
| 2q2z | ADP | Kinesin-like protein KIF11 | / | 0.676 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.676 | |
| 4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.675 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.674 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.674 | |
| 3bxz | ADP | Protein translocase subunit SecA | / | 0.672 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.672 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.671 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.671 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.671 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.669 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.668 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.668 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.667 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.667 | |
| 1kqm | ANP | Myosin heavy chain, striated muscle | / | 0.666 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.666 | |
| 2d7d | ADP | UvrABC system protein B | / | 0.666 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.664 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.664 | |
| 5da9 | AGS | Uncharacterized protein | / | 0.664 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.663 | |
| 1q12 | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.663 | |
| 2zro | ADP | Protein RecA | / | 0.663 | |
| 4tv9 | GTP | Tubulin alpha-1B chain | / | 0.663 | |
| 2jcs | TTP | Deoxynucleoside kinase | / | 0.662 | |
| 3aez | GDP | Pantothenate kinase | 2.7.1.33 | 0.662 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.660 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.659 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.659 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.659 | |
| 1a9x | ADP | Carbamoyl-phosphate synthase large chain | / | 0.658 | |
| 2a84 | ATP | Pantothenate synthetase | 6.3.2.1 | 0.658 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.657 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.657 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.657 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.657 | |
| 5cyp | GSP | Septin-9 | / | 0.657 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.656 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.655 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.653 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.653 | |
| 3mhy | ATP | Nitrogen regulatory protein P-II 1 | / | 0.653 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.652 | |
| 3dm5 | GDP | Signal recognition particle 54 kDa protein | / | 0.652 | |
| 4nu0 | AP5 | Adenylate kinase | / | 0.651 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.651 | |
| 4aff | ATP | Nitrogen regulatory protein P-II | / | 0.650 |