Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3t70 | DU4 | Deoxyuridine 5'-triphosphate nucleotidohydrolase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3t70 | DU4 | Deoxyuridine 5'-triphosphate nucleotidohydrolase | / | 1.000 | |
| 3t64 | DU3 | Deoxyuridine 5'-triphosphate nucleotidohydrolase | / | 0.641 | |
| 4wrk | DUP | DUTPase | / | 0.580 | |
| 2xy3 | DUP | SPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS | 3.6.1.23 | 0.530 | |
| 2y1t | DUD | SPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS | 3.6.1.23 | 0.518 | |
| 3bk2 | U5P | Ribonuclease J | / | 0.518 | |
| 2oke | DUP | DUTP pyrophosphatase | / | 0.513 | |
| 2g24 | 7IG | Renin | 3.4.23.15 | 0.509 | |
| 2g25 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.503 | |
| 4hmz | 18T | dTDP-4-dehydro-6-deoxyglucose 3-epimerase | 5.1.3.27 | 0.503 | |
| 1snf | UMP | Deoxyuridine 5'-triphosphate nucleotidohydrolase | 3.6.1.23 | 0.500 | |
| 2iku | LIY | Renin | 3.4.23.15 | 0.500 | |
| 1w6h | TIT | Plasmepsin-2 | 3.4.23.39 | 0.495 | |
| 2gv8 | NDP | Thiol-specific monooxygenase | 1.14.13 | 0.493 | |
| 3i8p | 840 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.489 | |
| 4mrm | 2BY | Gamma-aminobutyric acid type B receptor subunit 1 | / | 0.488 | |
| 1vyq | DUX | Deoxyuridine 5'-triphosphate nucleotidohydrolase | / | 0.486 | |
| 2fw3 | BUI | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.486 | |
| 2qw0 | 34Z | 4-chlorobenzoyl CoA ligase | / | 0.486 | |
| 2q1s | NAI | Putative nucleotide sugar epimerase/ dehydratase | / | 0.483 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.482 | |
| 4dpt | AGS | Mevalonate diphosphate decarboxylase | / | 0.482 | |
| 2v5a | LZL | Biotin carboxylase | 6.3.4.14 | 0.481 | |
| 4j4n | D44 | Peptidylprolyl isomerase | / | 0.481 | |
| 2rlc | CHD | Choloylglycine hydrolase | 3.5.1.24 | 0.479 | |
| 3g0y | P9A | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.479 | |
| 3ho2 | N32 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.479 | |
| 4p9d | TMP | Deoxycytidylate deaminase | / | 0.479 | |
| 3iqi | ASN_GLU_ASN_ILE | Cysteine synthase | 2.5.1.47 | 0.475 | |
| 1f17 | NAI | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.474 | |
| 2c20 | NAD | UDP-glucose 4-epimerase | / | 0.474 | |
| 2ji9 | TPW | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.473 | |
| 3h3t | 16H | Collagen type IV alpha-3-binding protein | / | 0.473 | |
| 3ohh | 3HH | Beta-secretase 1 | 3.4.23.46 | 0.473 | |
| 1ual | SAH | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.472 | |
| 3ojx | FMN | NADPH--cytochrome P450 reductase | / | 0.472 | |
| 5e5h | 0T1 | Succinyl-CoA:acetate CoA-transferase | / | 0.472 | |
| 1e3w | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.471 | |
| 5c1m | CLR | Mu-type opioid receptor | / | 0.471 | |
| 2g1r | 3IG | Renin | 3.4.23.15 | 0.470 | |
| 4a5s | N7F | Dipeptidyl peptidase 4 | / | 0.470 | |
| 2i4q | UA4 | Renin | 3.4.23.15 | 0.469 | |
| 3gwf | NAP | Cyclohexanone monooxygenase | / | 0.469 | |
| 3hyo | ADP | Pyridoxal kinase | / | 0.469 | |
| 4eua | COA | Succinyl-CoA:acetate CoA-transferase | / | 0.469 | |
| 1p5r | COA | Formyl-CoA:oxalate CoA-transferase | / | 0.468 | |
| 1t7o | 152 | Carnitine O-acetyltransferase | 2.3.1.7 | 0.468 | |
| 3u9f | CLM | Chloramphenicol acetyltransferase | 2.3.1.28 | 0.468 | |
| 4zwm | PLP | Ornithine aminotransferase, mitochondrial, putative | / | 0.468 | |
| 5ao1 | DG3 | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.468 | |
| 5dw6 | 0T1 | Succinyl-CoA:acetate CoA-transferase | / | 0.468 | |
| 2g1n | 1IG | Renin | 3.4.23.15 | 0.467 | |
| 2hfu | MEV | Mevalonate kinase | / | 0.467 | |
| 3ai3 | NDP | NADPH-sorbose reductase | / | 0.467 | |
| 3d91 | REM | Renin | 3.4.23.15 | 0.467 | |
| 3dv5 | BAV | Beta-secretase 1 | 3.4.23.46 | 0.467 | |
| 4a6r | TA8 | Probable aminotransferase | / | 0.467 | |
| 2zu8 | GDD | Mannosyl-3-phosphoglycerate synthase | 2.4.1.217 | 0.466 | |
| 3vyd | VYD | Renin | 3.4.23.15 | 0.466 | |
| 4ihl | 1F5 | 14-3-3 protein zeta/delta | / | 0.466 | |
| 3d64 | NAD | Adenosylhomocysteinase | / | 0.465 | |
| 1fxf | MJI | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.464 | |
| 1g6k | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.464 | |
| 2v58 | LZJ | Biotin carboxylase | 6.3.4.14 | 0.464 | |
| 4b2g | V1N | Uncharacterized protein | / | 0.464 | |
| 4c71 | 7RD | 3-oxoacyl-ACP synthase | / | 0.464 | |
| 4kgk | GTP | Uncharacterized protein | / | 0.464 | |
| 4nbt | NAD | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.464 | |
| 1bws | NDP | GDP-L-fucose synthase | / | 0.463 | |
| 2g1y | 5IG | Renin | 3.4.23.15 | 0.463 | |
| 2nr4 | FMN | Conserved protein | / | 0.463 | |
| 2ojt | UBA | Glutamate receptor ionotropic, kainate 1 | / | 0.463 | |
| 3k5c | 0BI | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 3p62 | FMN | Pentaerythritol tetranitrate reductase | / | 0.463 | |
| 4ewo | 996 | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 1o9b | NAI | Quinate/shikimate dehydrogenase | / | 0.462 | |
| 1ypg | UIR | Prothrombin | 3.4.21.5 | 0.462 | |
| 2il2 | LIX | Renin | 3.4.23.15 | 0.462 | |
| 3iqh | TYR_ASP_ILE | Cysteine synthase | 2.5.1.47 | 0.462 | |
| 4ara | C56 | Acetylcholinesterase | 3.1.1.7 | 0.462 | |
| 4yao | FMN | NADPH--cytochrome P450 reductase | / | 0.462 | |
| 1gj5 | 130 | Prothrombin | 3.4.21.5 | 0.461 | |
| 1iki | REY | D-alanyl-D-alanine carboxypeptidase | 3.4.16.4 | 0.461 | |
| 1kbo | 340 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.461 | |
| 1xe6 | 5FP | Plasmepsin-2 | 3.4.23.39 | 0.461 | |
| 2q1w | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.461 | |
| 2qs3 | UBE | Glutamate receptor ionotropic, kainate 1 | / | 0.461 | |
| 3h3r | 14H | Collagen type IV alpha-3-binding protein | / | 0.461 | |
| 3u8l | 09Q | Acetylcholine-binding protein | / | 0.461 | |
| 3vye | VYE | Renin | 3.4.23.15 | 0.461 | |
| 1bil | 0IU | Renin | 3.4.23.15 | 0.460 | |
| 2c31 | TZD | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.460 | |
| 3a0t | ADP | Sensor histidine kinase | / | 0.460 | |
| 3vyf | VYF | Renin | 3.4.23.15 | 0.460 | |
| 1jdt | MTA | Purine nucleoside phosphorylase | / | 0.459 | |
| 1q0z | AKA | Aclacinomycin methylesterase RdmC | 3.1.1.95 | 0.459 | |
| 1rfv | ADP | Pyridoxal kinase | 2.7.1.35 | 0.459 | |
| 1uda | UFG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.459 | |
| 1yqs | BSA | D-alanyl-D-alanine carboxypeptidase | 3.4.16.4 | 0.459 | |
| 2bb3 | SAH | Cobalamin biosynthesis precorrin-6Y methylase (CbiE) | / | 0.459 | |
| 3h0b | B35 | Beta-secretase 1 | 3.4.23.46 | 0.459 | |
| 3m1v | COM | Methyl-coenzyme M reductase I subunit alpha | 2.8.4.1 | 0.459 | |
| 3m1v | COM | Methyl-coenzyme M reductase I subunit beta | 2.8.4.1 | 0.459 | |
| 1h63 | FMN | Pentaerythritol tetranitrate reductase | / | 0.458 | |
| 2a58 | RBF | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.458 | |
| 2an9 | GDP | Guanylate kinase | 2.7.4.8 | 0.458 | |
| 2j83 | BAT | Ulilysin | 3.4.24 | 0.458 | |
| 2wqp | WQP | Polysialic acid capsule biosynthesis protein SiaC | / | 0.458 | |
| 3doc | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.458 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.458 | |
| 4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.458 | |
| 4j0v | 1H7 | Beta-secretase 1 | 3.4.23.46 | 0.458 | |
| 1ju2 | FAD | (R)-mandelonitrile lyase 2 | 4.1.2.10 | 0.457 | |
| 1rne | C60 | Renin | 3.4.23.15 | 0.457 | |
| 2ab8 | MTP | Adenosine kinase | 2.7.1.20 | 0.457 | |
| 2ol0 | DUD | DUTP pyrophosphatase | / | 0.457 | |
| 3aw9 | NAD | NAD-dependent epimerase/dehydratase | / | 0.457 | |
| 3kmx | G00 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 3lpj | Z75 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 3qvi | K95 | HAP protein | / | 0.457 | |
| 4j1k | 1HG | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 4xfj | ANP | Argininosuccinate synthase | / | 0.457 | |
| 5c1d | 12V | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit | / | 0.457 | |
| 5cfp | C2E | Stimulator of interferon genes protein | / | 0.457 | |
| 1o5g | CR9 | Prothrombin | 3.4.21.5 | 0.456 | |
| 2dkn | NAI | 3-alpha-hydroxysteroid dehydrogenase | / | 0.456 | |
| 2vb8 | TLM | 3-oxoacyl-[acyl-carrier-protein] synthase 1 | 2.3.1.41 | 0.456 | |
| 3nug | NAD | Pyridoxal 4-dehydrogenase | 1.1.1.107 | 0.456 | |
| 3zei | AWH | O-acetylserine sulfhydrylase | / | 0.456 | |
| 4f4d | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.456 | |
| 4gcm | NAP | Thioredoxin reductase | 1.8.1.9 | 0.456 | |
| 4hmx | FMN | Pyridoxamine 5'-phosphate oxidase | / | 0.456 | |
| 4kqr | VPP | Peptidoglycan D,D-transpeptidase FtsI | / | 0.456 | |
| 4xsv | C5P | Ethanolamine-phosphate cytidylyltransferase | 2.7.7.14 | 0.456 | |
| 1rzu | ADP | Glycogen synthase 1 | 2.4.1.21 | 0.455 | |
| 1yry | MSG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.455 | |
| 2aj8 | SC3 | Dipeptidyl peptidase 4 | / | 0.455 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.455 | |
| 2q1t | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.455 | |
| 2xup | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.455 | |
| 3eu5 | GBO | Protein farnesyltransferase subunit beta | 2.5.1.58 | 0.455 | |
| 3ggs | 2FD | Purine nucleoside phosphorylase | 2.4.2.1 | 0.455 | |
| 4gv4 | MEJ | Poly [ADP-ribose] polymerase 3 | 2.4.2.30 | 0.455 | |
| 4q0k | GA3 | Phytohormone-binding protein | / | 0.455 | |
| 5c3a | URM | Histo-blood group ABO system transferase | / | 0.455 | |
| 1h51 | FMN | Pentaerythritol tetranitrate reductase | / | 0.454 | |
| 2f3e | AXQ | Beta-secretase 1 | 3.4.23.46 | 0.454 | |
| 2g1s | 4IG | Renin | 3.4.23.15 | 0.454 | |
| 2vnk | FAD | NADPH:ferredoxin reductase | / | 0.454 | |
| 2ztv | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.454 | |
| 3eku | CY9 | Actin-5C | / | 0.454 | |
| 3h3q | H13 | Collagen type IV alpha-3-binding protein | / | 0.454 | |
| 3nsh | 957 | Beta-secretase 1 | 3.4.23.46 | 0.454 | |
| 3r96 | ACO | MccE protein | / | 0.454 | |
| 3zoi | M2W | Isopenicillin N synthase | 1.21.3.1 | 0.454 | |
| 4de2 | DN3 | Beta-lactamase | / | 0.454 | |
| 4i0i | 957 | Beta-secretase 1 | 3.4.23.46 | 0.454 | |
| 4m83 | ERY | Oleandomycin glycosyltransferase | 2.4.1 | 0.454 | |
| 4nbw | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.454 | |
| 4qnw | FMN | Chanoclavine-I aldehyde reductase easA | / | 0.454 | |
| 2a59 | LMZ | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.453 | |
| 5b1y | NDP | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.453 | |
| 2gfx | PMN | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.452 | |
| 4b0q | GMF | Beta-secretase 1 | 3.4.23.46 | 0.452 | |
| 4c72 | TLG | 3-oxoacyl-ACP synthase | / | 0.452 | |
| 4eud | COA | Succinyl-CoA:acetate CoA-transferase | / | 0.452 | |
| 4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.452 | |
| 1c3x | 8IG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.451 | |
| 1ex7 | 5GP | Guanylate kinase | 2.7.4.8 | 0.451 | |
| 1ndz | FR5 | Adenosine deaminase | 3.5.4.4 | 0.451 | |
| 2zi5 | 3L1 | Deoxycytidine kinase | 2.7.1.74 | 0.451 | |
| 3dy8 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.451 | |
| 3in6 | FMN | Uncharacterized protein | / | 0.451 | |
| 4hbg | NDP | 3-oxoacyl-[acyl-carrier-protein] reductase | 1.1.1.100 | 0.451 | |
| 4i0h | 1BL | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
| 1ay0 | TPP | Transketolase 1 | 2.2.1.1 | 0.450 | |
| 1n2j | PAF | Pantothenate synthetase | 6.3.2.1 | 0.450 | |
| 1rsz | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.450 | |
| 1v45 | 3DG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.450 | |
| 2iib | C5P | Alpha-2,3/2,6-sialyltransferase/sialidase | / | 0.450 | |
| 2lfo | GCH | Fatty acid-binding protein, liver | / | 0.450 | |
| 2p8u | COA | Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 2.3.3.10 | 0.450 | |
| 3elb | C5P | Ethanolamine-phosphate cytidylyltransferase | 2.7.7.14 | 0.450 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.450 | |
| 3fhx | PLP | Pyridoxal kinase | 2.7.1.35 | 0.450 | |
| 3ixp | 834 | Ecdysone receptor | / | 0.450 | |
| 3zbr | NAP | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.450 | |
| 4azy | 7F3 | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
| 4gz6 | 12V | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit | / | 0.450 | |
| 4la7 | A1O | Abscisic acid receptor PYL2 | / | 0.450 | |
| 4lut | DCS | Alanine racemase | / | 0.450 | |
| 1cbf | SAH | Cobalt-precorrin-4 C(11)-methyltransferase | 2.1.1.271 | 0.449 | |
| 1xl8 | 152 | Peroxisomal carnitine O-octanoyltransferase | 2.3.1.137 | 0.449 | |
| 2fut | H1S | Heparin and heparin-sulfate lyase | / | 0.449 | |
| 2oz5 | 7XY | Uncharacterized protein | / | 0.449 | |
| 2r8p | T6F | Transketolase 1 | / | 0.449 | |
| 2vyq | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.449 | |
| 3dyq | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.449 | |
| 3dyq | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.449 | |
| 3jun | AKD | Phenazine biosynthesis protein A/B | / | 0.449 | |
| 2fap | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.448 | |
| 2fap | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.448 | |
| 2g1o | 2IG | Renin | 3.4.23.15 | 0.448 | |
| 2pk3 | A2R | GDP-6-deoxy-D-mannose reductase | / | 0.448 | |
| 3g0b | T22 | Dipeptidyl peptidase 4 | / | 0.448 | |
| 3zhu | TD8 | Multifunctional 2-oxoglutarate metabolism enzyme | 1.2.4.2 | 0.448 | |
| 4anx | 534 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.448 | |
| 4eb5 | PLP | Cysteine desulfurase IscS 2 | / | 0.448 | |
| 4twr | NAD | NAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase | / | 0.448 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.448 | |
| 1ao0 | 5GP | Amidophosphoribosyltransferase | / | 0.447 | |
| 1qyw | 5SD | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.447 | |
| 2a2x | NA9 | Prothrombin | 3.4.21.5 | 0.447 | |
| 2g28 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.447 | |
| 2yye | APC | Selenide, water dikinase | 2.7.9.3 | 0.447 | |
| 3dyn | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.447 | |
| 3etd | NDP | Glutamate dehydrogenase 1, mitochondrial | 1.4.1.3 | 0.447 | |
| 3g2h | KOT | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.447 | |
| 3ko8 | NAD | NAD-dependent epimerase/dehydratase | / | 0.447 | |
| 3mau | EXT | Putative sphingosine-1-phosphate lyase | / | 0.447 | |
| 3rsv | 3RS | Beta-secretase 1 | 3.4.23.46 | 0.447 | |
| 4b5d | SW4 | Achbp | / | 0.447 | |
| 4jic | FMN | GTN Reductase | / | 0.447 | |
| 4k9o | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.447 | |
| 4kx6 | FAD | Fumarate reductase flavoprotein subunit | 1.3.5.4 | 0.447 | |
| 4rvf | TYD | D-mycarose 3-C-methyltransferase | / | 0.447 | |
| 4yvz | 3AT | DNA integrity scanning protein DisA | / | 0.447 | |
| 1icq | OPD | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.446 | |
| 1kh3 | ANP | Argininosuccinate synthase | / | 0.446 | |
| 1pq9 | 44B | Oxysterols receptor LXR-beta | / | 0.446 | |
| 1pwy | AC2 | Purine nucleoside phosphorylase | 2.4.2.1 | 0.446 | |
| 1x27 | ASP_TYR_VAL_HIS_PTR | Tyrosine-protein kinase Lck | 2.7.10.2 | 0.446 | |
| 2g22 | 6IG | Renin | 3.4.23.15 | 0.446 | |
| 2we3 | DUT | Deoxyuridine 5'-triphosphate nucleotidohydrolase | / | 0.446 | |
| 2xlr | FAD | Putative flavin-containing monooxygenase | / | 0.446 | |
| 3axk | NDP | Ribulose bisphosphate carboxylase large chain | 4.1.1.39 | 0.446 | |
| 3dop | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.446 | |
| 3dyl | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.446 | |
| 3ehe | NAD | UDP-glucose 4-epimerase (GalE-1) | / | 0.446 | |
| 3eks | CY9 | Actin-5C | / | 0.446 | |
| 3g0d | XIH | Dipeptidyl peptidase 4 | / | 0.446 | |
| 3lnc | 5GP | Guanylate kinase | / | 0.446 | |
| 3ndc | SAH | Precorrin-4 C(11)-methyltransferase | 2.1.1.133 | 0.446 | |
| 3oag | LPQ | Renin | 3.4.23.15 | 0.446 | |
| 4b1c | 1B1 | Beta-secretase 1 | 3.4.23.46 | 0.446 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.446 | |
| 4dri | RAP | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.446 | |
| 4dri | RAP | Peptidyl-prolyl cis-trans isomerase FKBP5 | 5.2.1.8 | 0.446 | |
| 4uoc | NCN | CinA-like protein | / | 0.446 | |
| 5dw5 | 0T1 | Succinyl-CoA:acetate CoA-transferase | / | 0.446 | |
| 5jsf | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.446 | |
| 1c7o | PPG | Hemolysin | / | 0.445 | |
| 1iqg | XME | Coagulation factor X | 3.4.21.6 | 0.445 | |
| 2gsd | NAD | Formate dehydrogenase | / | 0.445 | |
| 2p83 | MR0 | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
| 3fsu | FAD | 5,10-methylenetetrahydrofolate reductase | 1.5.1.20 | 0.445 | |
| 3hdh | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.445 | |
| 3lqf | NAD | Galactitol dehydrogenase | / | 0.445 | |
| 3p82 | FMN | Pentaerythritol tetranitrate reductase | / | 0.445 | |
| 3phj | DHK | Shikimate dehydrogenase (NADP(+)) | / | 0.445 | |
| 3qe2 | FMN | NADPH--cytochrome P450 reductase | / | 0.445 | |
| 4an4 | DUD | Putative glycosyl transferase | / | 0.445 | |
| 4b79 | NAD | Probable short-chain dehydrogenase | / | 0.445 | |
| 4g2l | 0WL | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.445 | |
| 4mok | FAD | Pyranose 2-oxidase | / | 0.445 | |
| 4ozt | P1A | Ecdysone receptor, putative | / | 0.445 | |
| 4uwm | FMN | 3,6-diketocamphane 1,6 monooxygenase | 1.14.13 | 0.445 | |
| 1foa | UD1 | Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase | 2.4.1.101 | 0.444 | |
| 1h69 | ARH | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.444 | |
| 1mrq | STR | Aldo-keto reductase family 1 member C1 | / | 0.444 | |
| 1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 1q0r | AKT | Aclacinomycin methylesterase RdmC | 3.1.1.95 | 0.444 | |
| 2cx8 | SAH | Ribosomal RNA small subunit methyltransferase E | / | 0.444 | |
| 2d4v | NAD | Isocitrate dehydrogenase [NADP] | / | 0.444 | |
| 2ktd | PUC | Prostaglandin-H2 D-isomerase | 5.3.99.2 | 0.444 | |
| 2ntr | L00 | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
| 3h3s | H15 | Collagen type IV alpha-3-binding protein | / | 0.444 | |
| 3jpu | TY4 | Transcriptional activator protein LasR | / | 0.444 | |
| 3lqs | PSZ | D-alanine aminotransferase | 2.6.1.21 | 0.444 | |
| 3q43 | D66 | M1 family aminopeptidase | 3.4.11 | 0.444 | |
| 3rfa | SAM | Dual-specificity RNA methyltransferase RlmN | / | 0.444 | |
| 5czy | SAM | Eukaryotic huntingtin interacting protein B | / | 0.444 | |
| 5ein | NAP | [LysW]-L-2-aminoadipate 6-phosphate reductase | / | 0.444 | |
| 3vw7 | VPX | Proteinase-activated receptor 1 | / | 0.444 | |
| 1hfq | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 1nsg | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.443 | |
| 1nsg | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.443 | |
| 1rct | NOS | Purine nucleoside phosphorylase | 2.4.2.1 | 0.443 | |
| 1rfg | GMP | Purine nucleoside phosphorylase | 2.4.2.1 | 0.443 | |
| 1txt | CAA | HMG-CoA synthase | / | 0.443 | |
| 2a1h | GBN | Branched-chain-amino-acid aminotransferase, mitochondrial | 2.6.1.42 | 0.443 | |
| 2a57 | CRM | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.443 | |
| 2b4q | NAP | Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase | 1.1.1.100 | 0.443 | |
| 2h3w | HC5 | Carnitine O-acetyltransferase | 2.3.1.7 | 0.443 | |
| 2vkm | BSD | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 2xvi | FAD | Putative flavin-containing monooxygenase | / | 0.443 | |
| 3bnk | FMN | Flavoredoxin | / | 0.443 | |
| 3cmf | PDN | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.443 | |
| 3duy | AFJ | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 3g0g | RUM | Dipeptidyl peptidase 4 | / | 0.443 | |
| 3lsi | FAD | Pyranose 2-oxidase | / | 0.443 | |
| 3oad | LPO | Renin | 3.4.23.15 | 0.443 | |
| 3qt6 | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.443 | |
| 4eu9 | COA | Succinyl-CoA:acetate CoA-transferase | / | 0.443 | |
| 4i1c | 1BE | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 4m49 | 22Y | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.443 | |
| 5js6 | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.443 | |
| 1h73 | ANP | Homoserine kinase | 2.7.1.39 | 0.442 | |
| 1ja1 | FMN | NADPH--cytochrome P450 reductase | / | 0.442 | |
| 1rx8 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 1z7y | AA5 | Cysteine synthase 1 | 2.5.1.47 | 0.442 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.442 | |
| 2d1y | NAD | Oxidoreductase, short-chain dehydrogenase/reductase family | / | 0.442 | |
| 2ejz | SAH | Diphthine synthase | / | 0.442 | |
| 2g21 | L1B | Renin | 3.4.23.15 | 0.442 | |
| 2iko | 7IG | Renin | 3.4.23.15 | 0.442 | |
| 2jb4 | A14 | Isopenicillin N synthase | 1.21.3.1 | 0.442 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.442 | |
| 2pam | TYD | TDP-4-oxo-6-deoxy-alpha-D-glucose-3,4-oxoisomerase | 5.3.2.3 | 0.442 | |
| 3dhe | AND | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.442 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.442 | |
| 3ibq | ATP | Pyridoxal kinase | / | 0.442 | |
| 3jyn | NDP | Quinone oxidoreductase | / | 0.442 | |
| 3oqf | S51 | Renin | 3.4.23.15 | 0.442 | |
| 3vsw | R31 | Renin | 3.4.23.15 | 0.442 | |
| 3vuc | HHE | Renin | 3.4.23.15 | 0.442 | |
| 4opg | FDA | Conserved Archaeal protein | / | 0.442 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.442 | |
| 4zj8 | SUV | Orexin receptor type 1 | / | 0.442 | |
| 1fm4 | DXC | Major pollen allergen Bet v 1-L | / | 0.441 | |
| 1vja | 7IN | Urokinase-type plasminogen activator | 3.4.21.73 | 0.441 | |
| 1x1b | SAH | C-20 methyltransferase | / | 0.441 | |
| 2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.441 | |
| 2xvq | 9DS | Serum albumin | / | 0.441 | |
| 3fp0 | FP0 | 15-O-acetyltransferase | / | 0.441 | |
| 3ivc | FG4 | Pantothenate synthetase | 6.3.2.1 | 0.441 | |
| 4ayv | 9MQ | Prothrombin | 3.4.21.5 | 0.441 | |
| 4c4o | NAD | SADH | / | 0.441 | |
| 4de3 | DN8 | Beta-lactamase | / | 0.441 | |
| 4dh6 | 0KN | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 4du8 | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.441 | |
| 4h3i | 10V | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 4k6f | NAP | Putative Acetoacetyl-CoA reductase | / | 0.441 | |
| 4l7j | 1W2 | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 4m6j | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 4mle | VO1 | Glucokinase | 2.7.1.2 | 0.441 | |
| 4v2g | ITC | Tetracycline repressor protein class D | / | 0.441 | |
| 4yp6 | NAP | Nicotinamide-nucleotide adenylyltransferase | 2.7.7.1 | 0.441 | |
| 5c8d | 5AD | Probable transcriptional regulator | / | 0.441 | |
| 1dli | UDX | UDP-glucose 6-dehydrogenase | / | 0.440 | |
| 1g1a | NAD | dTDP-glucose 4,6-dehydratase | / | 0.440 | |
| 2fdp | FRP | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.440 | |
| 2ii6 | C5P | Alpha-2,3/2,6-sialyltransferase/sialidase | / | 0.440 | |
| 2po3 | T4K | 4-dehydrase | / | 0.440 | |
| 2reh | FAD | Nitroalkane oxidase | 1.7.3.1 | 0.440 | |
| 2xiq | 5AD | Methylmalonyl-CoA mutase, mitochondrial | / | 0.440 | |
| 2zvb | SAH | Precorrin-3 C17-methyltransferase | / | 0.440 | |
| 2zvc | SAH | Precorrin-3 C17-methyltransferase | / | 0.440 | |
| 3dhc | CYK | N-acyl homoserine lactonase AiiA | 3.1.1.81 | 0.440 | |
| 3ens | ENS | Coagulation factor X | 3.4.21.6 | 0.440 | |
| 3flk | NAI | Tartrate dehydrogenase/decarboxylase | 1.1.1.93 | 0.440 | |
| 3kkz | SAM | Uncharacterized protein | / | 0.440 | |
| 3l5d | BDV | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 4b77 | 54M | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 4djy | 0KR | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 4frk | DWD | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 4j0t | 6T9 | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 4rvu | NDP | Probable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) | / | 0.440 | |
| 4wfr | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.440 |