2.000 Å
X-ray
2001-06-15
| Name: | Purine nucleoside phosphorylase |
|---|---|
| ID: | PNPH_SULSO |
| AC: | P50389 |
| Organism: | Sulfolobus solfataricus |
| Reign: | Archaea |
| TaxID: | 273057 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 13 % |
| C | 87 % |
| B-Factor: | 30.706 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.234 | 651.375 |
| % Hydrophobic | % Polar |
|---|---|
| 41.45 | 58.55 |
| According to VolSite | |

| HET Code: | MTA |
|---|---|
| Formula: | C11H15N5O3S |
| Molecular weight: | 297.333 g/mol |
| DrugBank ID: | DB02282 |
| Buried Surface Area: | 74.27 % |
| Polar Surface area: | 144.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 76.9222 | 122.457 | 15.9711 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CS | CG2 | VAL- 4 | 4.01 | 0 | Hydrophobic |
| C3' | CG2 | ILE- 64 | 4.46 | 0 | Hydrophobic |
| CS | CE1 | PHE- 160 | 4.3 | 0 | Hydrophobic |
| C5' | CE1 | PHE- 160 | 3.9 | 0 | Hydrophobic |
| N1 | OE1 | GLU- 163 | 3.04 | 163.51 | H-Bond (Protein Donor) |
| C2' | CG | MET- 181 | 3.8 | 0 | Hydrophobic |
| C3' | SD | MET- 181 | 4.04 | 0 | Hydrophobic |
| O2' | N | MET- 181 | 2.99 | 132.02 | H-Bond (Protein Donor) |
| N6 | OD1 | ASP- 205 | 3.12 | 149.39 | H-Bond (Ligand Donor) |