2.000 Å
X-ray
2001-06-15
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | PNPH_SULSO |
AC: | P50389 |
Organism: | Sulfolobus solfataricus |
Reign: | Archaea |
TaxID: | 273057 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 13 % |
C | 87 % |
B-Factor: | 30.706 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.234 | 651.375 |
% Hydrophobic | % Polar |
---|---|
41.45 | 58.55 |
According to VolSite |
HET Code: | MTA |
---|---|
Formula: | C11H15N5O3S |
Molecular weight: | 297.333 g/mol |
DrugBank ID: | DB02282 |
Buried Surface Area: | 74.27 % |
Polar Surface area: | 144.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
76.9222 | 122.457 | 15.9711 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CS | CG2 | VAL- 4 | 4.01 | 0 | Hydrophobic |
C3' | CG2 | ILE- 64 | 4.46 | 0 | Hydrophobic |
CS | CE1 | PHE- 160 | 4.3 | 0 | Hydrophobic |
C5' | CE1 | PHE- 160 | 3.9 | 0 | Hydrophobic |
N1 | OE1 | GLU- 163 | 3.04 | 163.51 | H-Bond (Protein Donor) |
C2' | CG | MET- 181 | 3.8 | 0 | Hydrophobic |
C3' | SD | MET- 181 | 4.04 | 0 | Hydrophobic |
O2' | N | MET- 181 | 2.99 | 132.02 | H-Bond (Protein Donor) |
N6 | OD1 | ASP- 205 | 3.12 | 149.39 | H-Bond (Ligand Donor) |