2.800 Å
X-ray
2003-07-02
| Name: | Purine nucleoside phosphorylase |
|---|---|
| ID: | PNPH_HUMAN |
| AC: | P00491 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.4.2.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| E | 100 % |
| B-Factor: | 38.538 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.939 | 556.875 |
| % Hydrophobic | % Polar |
|---|---|
| 49.09 | 50.91 |
| According to VolSite | |

| HET Code: | AC2 |
|---|---|
| Formula: | C8H11N5O3 |
| Molecular weight: | 225.205 g/mol |
| DrugBank ID: | DB00787 |
| Buried Surface Area: | 67.73 % |
| Polar Surface area: | 114.76 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -16.7142 | 87.7747 | 0.676063 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3' | CB | ALA- 116 | 4.41 | 0 | Hydrophobic |
| C1' | CB | ALA- 116 | 4.28 | 0 | Hydrophobic |
| C2' | CZ | PHE- 200 | 3.44 | 0 | Hydrophobic |
| N1 | OE2 | GLU- 201 | 3.03 | 162.64 | H-Bond (Ligand Donor) |
| N2 | OE1 | GLU- 201 | 2.55 | 151.51 | H-Bond (Ligand Donor) |
| N2 | OE2 | GLU- 201 | 3.28 | 145.29 | H-Bond (Ligand Donor) |
| N7 | ND2 | ASN- 243 | 2.91 | 129.18 | H-Bond (Protein Donor) |
| O6 | ND2 | ASN- 243 | 2.65 | 128.4 | H-Bond (Protein Donor) |
| C3' | CB | HIS- 257 | 3.92 | 0 | Hydrophobic |