2.800 Å
X-ray
2005-02-05
| Name: | Purine nucleoside phosphorylase |
|---|---|
| ID: | PNPH_HUMAN |
| AC: | P00491 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.4.2.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| E | 100 % |
| B-Factor: | 37.746 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.858 | 594.000 |
| % Hydrophobic | % Polar |
|---|---|
| 43.18 | 56.82 |
| According to VolSite | |

| HET Code: | MSG |
|---|---|
| Formula: | C11H15N5O4S |
| Molecular weight: | 313.333 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 73.71 % |
| Polar Surface area: | 150.43 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 52.6646 | 47.2213 | 28.2432 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CB | SER- 33 | 4.19 | 0 | Hydrophobic |
| C3' | CE1 | TYR- 88 | 4.26 | 0 | Hydrophobic |
| O3' | OH | TYR- 88 | 2.76 | 155.38 | H-Bond (Protein Donor) |
| N1 | OE2 | GLU- 201 | 2.91 | 138.57 | H-Bond (Ligand Donor) |
| N2 | OE1 | GLU- 201 | 2.7 | 133.45 | H-Bond (Ligand Donor) |
| O2' | N | MET- 219 | 3.05 | 147.56 | H-Bond (Protein Donor) |
| C2' | SD | MET- 219 | 3.95 | 0 | Hydrophobic |
| C1 | CB | THR- 242 | 4.08 | 0 | Hydrophobic |
| C1 | CB | ASN- 243 | 4.4 | 0 | Hydrophobic |
| C5' | CB | HIS- 257 | 3.31 | 0 | Hydrophobic |