2.800 Å
X-ray
2005-02-05
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | PNPH_HUMAN |
AC: | P00491 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.4.2.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 100 % |
B-Factor: | 37.746 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.858 | 594.000 |
% Hydrophobic | % Polar |
---|---|
43.18 | 56.82 |
According to VolSite |
HET Code: | MSG |
---|---|
Formula: | C11H15N5O4S |
Molecular weight: | 313.333 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 73.71 % |
Polar Surface area: | 150.43 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
52.6646 | 47.2213 | 28.2432 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CB | SER- 33 | 4.19 | 0 | Hydrophobic |
C3' | CE1 | TYR- 88 | 4.26 | 0 | Hydrophobic |
O3' | OH | TYR- 88 | 2.76 | 155.38 | H-Bond (Protein Donor) |
N1 | OE2 | GLU- 201 | 2.91 | 138.57 | H-Bond (Ligand Donor) |
N2 | OE1 | GLU- 201 | 2.7 | 133.45 | H-Bond (Ligand Donor) |
O2' | N | MET- 219 | 3.05 | 147.56 | H-Bond (Protein Donor) |
C2' | SD | MET- 219 | 3.95 | 0 | Hydrophobic |
C1 | CB | THR- 242 | 4.08 | 0 | Hydrophobic |
C1 | CB | ASN- 243 | 4.4 | 0 | Hydrophobic |
C5' | CB | HIS- 257 | 3.31 | 0 | Hydrophobic |