2.070 Å
X-ray
2015-07-08
| Name: | Stimulator of interferon genes protein |
|---|---|
| ID: | STING_NEMVE |
| AC: | A7SLZ2 |
| Organism: | Nematostella vectensis |
| Reign: | Eukaryota |
| TaxID: | 45351 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 47 % |
| B | 53 % |
| B-Factor: | 44.329 |
|---|---|
| Number of residues: | 51 |
| Including | |
| Standard Amino Acids: | 45 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 5 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.733 | 1680.750 |
| % Hydrophobic | % Polar |
|---|---|
| 35.94 | 64.06 |
| According to VolSite | |

| HET Code: | C2E |
|---|---|
| Formula: | C20H22N10O14P2 |
| Molecular weight: | 688.395 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 56.2 % |
| Polar Surface area: | 366.32 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 20 |
| H-Bond Donors: | 6 |
| Rings: | 7 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -18.433 | -15.13 | 25.2871 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | CB | SER- 201 | 4.13 | 0 | Hydrophobic |
| C5A | CB | SER- 201 | 4.34 | 0 | Hydrophobic |
| C1A | CD1 | TYR- 202 | 4.04 | 0 | Hydrophobic |
| C1' | CD1 | TYR- 202 | 3.97 | 0 | Hydrophobic |
| C1' | CB | TYR- 206 | 3.82 | 0 | Hydrophobic |
| C1A | CB | TYR- 206 | 3.76 | 0 | Hydrophobic |
| N7 | NH2 | ARG- 278 | 2.84 | 167.94 | H-Bond (Protein Donor) |
| N71 | NH2 | ARG- 278 | 2.86 | 169.99 | H-Bond (Protein Donor) |
| C2' | CB | THR- 303 | 4.27 | 0 | Hydrophobic |
| C2A | CB | THR- 303 | 4.2 | 0 | Hydrophobic |
| O2P | O | HOH- 515 | 2.55 | 179.95 | H-Bond (Protein Donor) |
| O11 | O | HOH- 536 | 2.74 | 179.97 | H-Bond (Protein Donor) |
| N1 | O | HOH- 555 | 3.29 | 125.97 | H-Bond (Ligand Donor) |