2.070 Å
X-ray
2015-07-08
Name: | Stimulator of interferon genes protein |
---|---|
ID: | STING_NEMVE |
AC: | A7SLZ2 |
Organism: | Nematostella vectensis |
Reign: | Eukaryota |
TaxID: | 45351 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 47 % |
B | 53 % |
B-Factor: | 44.329 |
---|---|
Number of residues: | 51 |
Including | |
Standard Amino Acids: | 45 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 5 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.733 | 1680.750 |
% Hydrophobic | % Polar |
---|---|
35.94 | 64.06 |
According to VolSite |
HET Code: | C2E |
---|---|
Formula: | C20H22N10O14P2 |
Molecular weight: | 688.395 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.2 % |
Polar Surface area: | 366.32 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 20 |
H-Bond Donors: | 6 |
Rings: | 7 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-18.433 | -15.13 | 25.2871 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CB | SER- 201 | 4.13 | 0 | Hydrophobic |
C5A | CB | SER- 201 | 4.34 | 0 | Hydrophobic |
C1A | CD1 | TYR- 202 | 4.04 | 0 | Hydrophobic |
C1' | CD1 | TYR- 202 | 3.97 | 0 | Hydrophobic |
C1' | CB | TYR- 206 | 3.82 | 0 | Hydrophobic |
C1A | CB | TYR- 206 | 3.76 | 0 | Hydrophobic |
N7 | NH2 | ARG- 278 | 2.84 | 167.94 | H-Bond (Protein Donor) |
N71 | NH2 | ARG- 278 | 2.86 | 169.99 | H-Bond (Protein Donor) |
C2' | CB | THR- 303 | 4.27 | 0 | Hydrophobic |
C2A | CB | THR- 303 | 4.2 | 0 | Hydrophobic |
O2P | O | HOH- 515 | 2.55 | 179.95 | H-Bond (Protein Donor) |
O11 | O | HOH- 536 | 2.74 | 179.97 | H-Bond (Protein Donor) |
N1 | O | HOH- 555 | 3.29 | 125.97 | H-Bond (Ligand Donor) |