2.500 Å
X-ray
2007-03-27
Name: | TDP-4-oxo-6-deoxy-alpha-D-glucose-3,4-oxoisomerase |
---|---|
ID: | FDTA_ANETH |
AC: | Q6T1W8 |
Organism: | Aneurinibacillus thermoaerophilus |
Reign: | Bacteria |
TaxID: | 143495 |
EC Number: | 5.3.2.3 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 58 % |
B | 42 % |
B-Factor: | 31.538 |
---|---|
Number of residues: | 20 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.335 | 725.625 |
% Hydrophobic | % Polar |
---|---|
40.93 | 59.07 |
According to VolSite |
HET Code: | TYD |
---|---|
Formula: | C10H13N2O11P2 |
Molecular weight: | 399.165 g/mol |
DrugBank ID: | DB03103 |
Buried Surface Area: | 40.49 % |
Polar Surface area: | 220.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
16.7375 | 23.3056 | 58.9364 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CG2 | ILE- 11 | 4.05 | 0 | Hydrophobic |
O2A | NH2 | ARG- 15 | 2.96 | 137.67 | H-Bond (Protein Donor) |
C5M | CD1 | LEU- 18 | 3.9 | 0 | Hydrophobic |
O4 | NH2 | ARG- 33 | 2.6 | 126.81 | H-Bond (Protein Donor) |
C5M | CE1 | TYR- 35 | 3.98 | 0 | Hydrophobic |
C5M | CD1 | TYR- 114 | 4.26 | 0 | Hydrophobic |
C2' | CZ | TYR- 114 | 3.52 | 0 | Hydrophobic |
O1A | NH1 | ARG- 121 | 3.29 | 165.3 | H-Bond (Protein Donor) |
O1A | CZ | ARG- 121 | 3.96 | 0 | Ionic (Protein Cationic) |