2.500 Å
X-ray
2007-03-27
| Name: | TDP-4-oxo-6-deoxy-alpha-D-glucose-3,4-oxoisomerase |
|---|---|
| ID: | FDTA_ANETH |
| AC: | Q6T1W8 |
| Organism: | Aneurinibacillus thermoaerophilus |
| Reign: | Bacteria |
| TaxID: | 143495 |
| EC Number: | 5.3.2.3 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 58 % |
| B | 42 % |
| B-Factor: | 31.538 |
|---|---|
| Number of residues: | 20 |
| Including | |
| Standard Amino Acids: | 19 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.335 | 725.625 |
| % Hydrophobic | % Polar |
|---|---|
| 40.93 | 59.07 |
| According to VolSite | |

| HET Code: | TYD |
|---|---|
| Formula: | C10H13N2O11P2 |
| Molecular weight: | 399.165 g/mol |
| DrugBank ID: | DB03103 |
| Buried Surface Area: | 40.49 % |
| Polar Surface area: | 220.27 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 11 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 16.7375 | 23.3056 | 58.9364 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CG2 | ILE- 11 | 4.05 | 0 | Hydrophobic |
| O2A | NH2 | ARG- 15 | 2.96 | 137.67 | H-Bond (Protein Donor) |
| C5M | CD1 | LEU- 18 | 3.9 | 0 | Hydrophobic |
| O4 | NH2 | ARG- 33 | 2.6 | 126.81 | H-Bond (Protein Donor) |
| C5M | CE1 | TYR- 35 | 3.98 | 0 | Hydrophobic |
| C5M | CD1 | TYR- 114 | 4.26 | 0 | Hydrophobic |
| C2' | CZ | TYR- 114 | 3.52 | 0 | Hydrophobic |
| O1A | NH1 | ARG- 121 | 3.29 | 165.3 | H-Bond (Protein Donor) |
| O1A | CZ | ARG- 121 | 3.96 | 0 | Ionic (Protein Cationic) |