1.400 Å
X-ray
2012-01-19
Name: | Beta-lactamase |
---|---|
ID: | Q9L5C8_ECOLX |
AC: | Q9L5C8 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 562 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 7.493 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.174 | 378.000 |
% Hydrophobic | % Polar |
---|---|
29.46 | 70.54 |
According to VolSite |
HET Code: | DN3 |
---|---|
Formula: | C17H18N6O |
Molecular weight: | 322.364 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 52.9 % |
Polar Surface area: | 86.31 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-7.87954 | 55.88 | 12.1677 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O14 | ND2 | ASN- 104 | 2.91 | 169.22 | H-Bond (Protein Donor) |
C8 | CB | TYR- 105 | 3.77 | 0 | Hydrophobic |
C7 | CB | SER- 130 | 3.93 | 0 | Hydrophobic |
N3 | OG | SER- 130 | 2.68 | 163.67 | H-Bond (Protein Donor) |
O14 | ND2 | ASN- 132 | 3.07 | 135.96 | H-Bond (Protein Donor) |
C20 | CB | PRO- 167 | 3.98 | 0 | Hydrophobic |
C20 | CB | ASN- 170 | 3.67 | 0 | Hydrophobic |
N4 | OG1 | THR- 235 | 2.65 | 159.25 | H-Bond (Ligand Donor) |
N1 | OG | SER- 237 | 2.75 | 161.17 | H-Bond (Protein Donor) |