2.530 Å
X-ray
2012-03-23
Name: | Cysteine desulfurase IscS 2 |
---|---|
ID: | ISCS2_ARCFU |
AC: | O29689 |
Organism: | Archaeoglobus fulgidus |
Reign: | Archaea |
TaxID: | 224325 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 23 % |
B | 77 % |
B-Factor: | 39.064 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.249 | 1319.625 |
% Hydrophobic | % Polar |
---|---|
32.48 | 67.52 |
According to VolSite |
HET Code: | PLP |
---|---|
Formula: | C8H8NO6P |
Molecular weight: | 245.126 g/mol |
DrugBank ID: | DB00114 |
Buried Surface Area: | 57.05 % |
Polar Surface area: | 132.42 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-3.95525 | 17.615 | -29.8826 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5A | CB | ALA- 69 | 4.11 | 0 | Hydrophobic |
O2P | N | THR- 70 | 2.83 | 145.13 | H-Bond (Protein Donor) |
O2P | OG1 | THR- 70 | 2.72 | 147.41 | H-Bond (Protein Donor) |
C2A | CB | HIS- 98 | 4.47 | 0 | Hydrophobic |
C3 | CB | HIS- 98 | 4.39 | 0 | Hydrophobic |
C5 | CB | HIS- 98 | 4.43 | 0 | Hydrophobic |
C2A | CB | ASN- 149 | 4.18 | 0 | Hydrophobic |
O3 | ND2 | ASN- 149 | 2.66 | 154.15 | H-Bond (Protein Donor) |
N1 | OD2 | ASP- 173 | 2.72 | 159.67 | H-Bond (Ligand Donor) |
C2A | CB | THR- 175 | 3.87 | 0 | Hydrophobic |
C3 | CG2 | THR- 175 | 3.76 | 0 | Hydrophobic |
C2A | CB | ALA- 176 | 4.49 | 0 | Hydrophobic |
O3P | OG | SER- 234 | 2.51 | 160.09 | H-Bond (Protein Donor) |
O3P | N | SER- 234 | 3.06 | 156.18 | H-Bond (Protein Donor) |