2.800 Å
X-ray
2003-11-04
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | PNPH_HUMAN |
AC: | P00491 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.4.2.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 100 % |
B-Factor: | 41.484 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.810 | 324.000 |
% Hydrophobic | % Polar |
---|---|
40.63 | 59.38 |
According to VolSite |
HET Code: | NOS |
---|---|
Formula: | C10H12N4O5 |
Molecular weight: | 268.226 g/mol |
DrugBank ID: | DB04335 |
Buried Surface Area: | 71.19 % |
Polar Surface area: | 133.75 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
53.6515 | 129.301 | 55.1294 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3' | OH | TYR- 88 | 3.03 | 164.41 | H-Bond (Protein Donor) |
C1' | CB | ALA- 116 | 4.29 | 0 | Hydrophobic |
N1 | OE1 | GLU- 201 | 3.15 | 121.52 | H-Bond (Ligand Donor) |
N1 | OE2 | GLU- 201 | 2.5 | 161.47 | H-Bond (Ligand Donor) |
C2' | CG | MET- 219 | 3.88 | 0 | Hydrophobic |
C3' | SD | MET- 219 | 3.93 | 0 | Hydrophobic |
O2' | N | MET- 219 | 3.05 | 142.31 | H-Bond (Protein Donor) |
O6 | ND2 | ASN- 243 | 2.87 | 156.92 | H-Bond (Protein Donor) |
C5' | CB | HIS- 257 | 3.39 | 0 | Hydrophobic |
O5' | ND1 | HIS- 257 | 2.99 | 174.99 | H-Bond (Ligand Donor) |