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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rct NOS Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rct NOSPurine nucleoside phosphorylase 2.4.2.1 0.886
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.742
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.739
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.728
1rfg GMPPurine nucleoside phosphorylase 2.4.2.1 0.725
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.706
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.704
1pf7 IMHPurine nucleoside phosphorylase 2.4.2.1 0.690
3faz NOSPurine nucleoside phosphorylase / 0.687
1sd1 FMCS-methyl-5'-thioadenosine phosphorylase / 0.686
1v45 3DGPurine nucleoside phosphorylase 2.4.2.1 0.683
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.675
2p4s DIHAGAP005945-PA / 0.672
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.661