3.000 Å
X-ray
2012-07-12
Name: | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A |
---|---|
ID: | PDE9A_HUMAN |
AC: | O76083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 33.574 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN MG |
Ligandability | Volume (Å3) |
---|---|
1.128 | 880.875 |
% Hydrophobic | % Polar |
---|---|
55.56 | 44.44 |
According to VolSite |
HET Code: | 0WL |
---|---|
Formula: | C19H24N7O |
Molecular weight: | 366.440 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 44.79 % |
Polar Surface area: | 89.5 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 2 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
97.5455 | 21.8776 | 11.8205 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | CG | MET- 365 | 3.74 | 0 | Hydrophobic |
C12 | CG2 | ILE- 403 | 4.46 | 0 | Hydrophobic |
C18 | CD2 | LEU- 420 | 3.85 | 0 | Hydrophobic |
C13 | CD2 | LEU- 420 | 3.87 | 0 | Hydrophobic |
C18 | CD2 | LEU- 421 | 4.32 | 0 | Hydrophobic |
C16 | CE2 | TYR- 424 | 4.21 | 0 | Hydrophobic |
C18 | CE2 | TYR- 424 | 3.85 | 0 | Hydrophobic |
N26 | OH | TYR- 424 | 3.28 | 159.71 | H-Bond (Ligand Donor) |
C1 | CB | PHE- 441 | 4.42 | 0 | Hydrophobic |
C16 | CD1 | PHE- 441 | 3.78 | 0 | Hydrophobic |
C18 | CB | ALA- 452 | 3.89 | 0 | Hydrophobic |
N25 | OE1 | GLN- 453 | 2.72 | 163.31 | H-Bond (Ligand Donor) |
O27 | NE2 | GLN- 453 | 3.04 | 175.62 | H-Bond (Protein Donor) |