1.500 Å
X-ray
2013-09-19
| Name: | 3-oxoacyl-ACP synthase |
|---|---|
| ID: | I6Y8T4_MYCTU |
| AC: | I6Y8T4 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 83332 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 16.353 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.324 | 425.250 |
| % Hydrophobic | % Polar |
|---|---|
| 59.52 | 40.48 |
| According to VolSite | |

| HET Code: | TLG |
|---|---|
| Formula: | C12H13O3S |
| Molecular weight: | 237.295 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 74.91 % |
| Polar Surface area: | 82.5 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 0 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -6.469 | -21.6822 | 7.435 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C14 | CB | ALA- 215 | 4.09 | 0 | Hydrophobic |
| C14 | CD2 | PHE- 237 | 3.72 | 0 | Hydrophobic |
| C1 | CB | PRO- 280 | 3.94 | 0 | Hydrophobic |
| C3 | CG | PRO- 280 | 3.93 | 0 | Hydrophobic |
| O11 | NE2 | HIS- 311 | 2.85 | 173.28 | H-Bond (Protein Donor) |
| C14 | CG2 | THR- 315 | 3.92 | 0 | Hydrophobic |
| O11 | NE2 | HIS- 345 | 2.99 | 165.1 | H-Bond (Protein Donor) |
| S | CB | PHE- 402 | 3.96 | 0 | Hydrophobic |
| C1 | CB | PHE- 402 | 3.64 | 0 | Hydrophobic |
| C4 | CE1 | PHE- 404 | 4.32 | 0 | Hydrophobic |
| C14 | CE1 | PHE- 404 | 3.93 | 0 | Hydrophobic |