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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

4eua

2.400 Å

X-ray

2012-04-25

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Succinyl-CoA:acetate CoA-transferase
ID:SCACT_ACEAC
AC:B3EY95
Organism:Acetobacter aceti
Reign:Bacteria
TaxID:435
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:13.981
Number of residues:51
Including
Standard Amino Acids: 46
Non Standard Amino Acids: 0
Water Molecules: 5
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.210955.125

% Hydrophobic% Polar
44.5255.48
According to VolSite

Ligand :
4eua_2 Structure
HET Code: COA
Formula: C21H32N7O16P3S
Molecular weight: 763.502 g/mol
DrugBank ID: DB01992
Buried Surface Area:42.47 %
Polar Surface area: 426.11 Å2
Number of
H-Bond Acceptors: 21
H-Bond Donors: 6
Rings: 3
Aromatic rings: 2
Anionic atoms: 4
Cationic atoms: 0
Rule of Five Violation: 3
Rotatable Bonds: 18

Mass center Coordinates

XYZ
-13.0714-20.2539-34.6087


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C6PCE1PHE- 923.880Hydrophobic
N6AOILE- 3642.84134.19H-Bond
(Ligand Donor)
CDPCD1ILE- 3644.050Hydrophobic
CEPCD1ILE- 3644.070Hydrophobic
C1BCEMET- 3834.340Hydrophobic
CEPCGMET- 3833.820Hydrophobic
O9PND2ASN- 3842.83166.6H-Bond
(Protein Donor)
O9POHOH- 6172.8139.84H-Bond
(Protein Donor)
O5POHOH- 6742.63135.32H-Bond
(Protein Donor)
N6AOHOH- 10033.11168.67H-Bond
(Ligand Donor)