1.950 Å
X-ray
2010-06-30
| Name: | Methylmalonyl-CoA mutase, mitochondrial |
|---|---|
| ID: | MUTA_HUMAN |
| AC: | P22033 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 26.190 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.327 | 2183.625 |
| % Hydrophobic | % Polar |
|---|---|
| 47.76 | 52.24 |
| According to VolSite | |

| HET Code: | 5AD |
|---|---|
| Formula: | C10H13N5O3 |
| Molecular weight: | 251.242 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.92 % |
| Polar Surface area: | 119.31 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 12.0868 | 85.6992 | 125.929 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CD2 | TYR- 110 | 3.76 | 0 | Hydrophobic |
| O3' | OH | TYR- 264 | 3.1 | 139.46 | H-Bond (Protein Donor) |
| C5' | CE2 | TYR- 264 | 3.74 | 0 | Hydrophobic |
| O4' | NE2 | GLN- 352 | 3.37 | 174.4 | H-Bond (Protein Donor) |
| O2' | OE2 | GLU- 392 | 3.17 | 133.5 | H-Bond (Ligand Donor) |
| O2' | OE1 | GLU- 392 | 2.93 | 165.46 | H-Bond (Ligand Donor) |
| O3' | OE2 | GLU- 392 | 2.64 | 153.48 | H-Bond (Ligand Donor) |