1.550 Å
X-ray
2015-09-22
Name: | Succinyl-CoA:acetate CoA-transferase |
---|---|
ID: | SCACT_ACEAC |
AC: | B3EY95 |
Organism: | Acetobacter aceti |
Reign: | Bacteria |
TaxID: | 435 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 14.658 |
---|---|
Number of residues: | 54 |
Including | |
Standard Amino Acids: | 47 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 7 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.988 | 634.500 |
% Hydrophobic | % Polar |
---|---|
42.55 | 57.45 |
According to VolSite |
HET Code: | 0T1 |
---|---|
Formula: | C22H34N7O16P3 |
Molecular weight: | 745.464 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 45.01 % |
Polar Surface area: | 387.31 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 20 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 18 |
X | Y | Z |
---|---|---|
-6.63508 | 13.7097 | -25.8515 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C6P | CE1 | PHE- 92 | 3.88 | 0 | Hydrophobic |
C1P | CG | GLN- 267 | 4.26 | 0 | Hydrophobic |
C1P | CG | GLU- 294 | 3.86 | 0 | Hydrophobic |
N6A | O | ILE- 364 | 2.79 | 136.44 | H-Bond (Ligand Donor) |
CDP | CD1 | ILE- 364 | 4.11 | 0 | Hydrophobic |
CEP | CD1 | ILE- 364 | 4.05 | 0 | Hydrophobic |
C1B | CE | MET- 383 | 4.17 | 0 | Hydrophobic |
C4B | SD | MET- 383 | 4.21 | 0 | Hydrophobic |
CEP | CG | MET- 383 | 3.74 | 0 | Hydrophobic |
O9P | ND2 | ASN- 384 | 2.83 | 166.97 | H-Bond (Protein Donor) |
C2P | CB | SER- 389 | 4.46 | 0 | Hydrophobic |
C1P | CD2 | PHE- 392 | 3.88 | 0 | Hydrophobic |
O7A | NZ | LYS- 408 | 3.84 | 0 | Ionic (Protein Cationic) |
O5P | O | HOH- 758 | 2.64 | 179.97 | H-Bond (Protein Donor) |
O9P | O | HOH- 794 | 2.78 | 139.34 | H-Bond (Protein Donor) |
N6A | O | HOH- 801 | 3.01 | 163.97 | H-Bond (Ligand Donor) |
O5A | O | HOH- 843 | 3.08 | 179.97 | H-Bond (Protein Donor) |
N4P | O | HOH- 923 | 2.83 | 156.8 | H-Bond (Ligand Donor) |