sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3e5h | GNP | Ras-related protein Rab-28 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.230 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.180 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.175 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.145 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.120 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.119 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.107 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.090 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.089 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.080 | |
| 4dso | GSP | GTPase KRas | / | 1.073 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.073 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.068 | |
| 4dlz | GNP | GTPase HRas | / | 1.066 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.065 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.055 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.050 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.050 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.048 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.045 | |
| 3oiw | GNP | GTPase HRas | / | 1.044 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.041 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.040 | |
| 3l8y | GNP | GTPase HRas | / | 1.039 | |
| 3i3s | GNP | GTPase HRas | / | 1.035 | |
| 3k8y | GNP | GTPase HRas | / | 1.035 | |
| 4dlv | GNP | GTPase HRas | / | 1.035 | |
| 3rs5 | GNP | GTPase HRas | / | 1.034 | |
| 4nyj | GNP | GTPase HRas | / | 1.034 | |
| 2c5l | GTP | GTPase HRas | / | 1.033 | |
| 4dlx | GNP | GTPase HRas | / | 1.033 | |
| 3ddc | GNP | GTPase HRas | / | 1.032 | |
| 3lbh | GNP | GTPase HRas | / | 1.032 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.031 | |
| 3rs4 | GNP | GTPase HRas | / | 1.030 | |
| 3rs7 | GNP | GTPase HRas | / | 1.029 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.028 | |
| 4g0n | GNP | GTPase HRas | / | 1.028 | |
| 3rs0 | GNP | GTPase HRas | / | 1.027 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.026 | |
| 3rsl | GNP | GTPase HRas | / | 1.025 | |
| 3oiv | GNP | GTPase HRas | / | 1.024 | |
| 3lbi | GNP | GTPase HRas | / | 1.023 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.023 | |
| 3oiu | GNP | GTPase HRas | / | 1.021 | |
| 3v4f | GNP | GTPase HRas | / | 1.021 | |
| 4nyi | GNP | GTPase HRas | / | 1.018 | |
| 4dlw | GNP | GTPase HRas | / | 1.014 | |
| 5b2z | GNP | GTPase HRas | / | 1.014 | |
| 3lbn | GNP | GTPase HRas | / | 1.011 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.009 | |
| 4l9w | GNP | GTPase HRas | / | 1.008 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.006 | |
| 2rgc | GNP | GTPase HRas | / | 1.004 | |
| 2rge | GNP | GTPase HRas | / | 1.002 | |
| 4dlt | GNP | GTPase HRas | / | 1.000 | |
| 2rgb | GNP | GTPase HRas | / | 0.999 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.994 | |
| 4k81 | GTP | GTPase HRas | / | 0.994 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.992 | |
| 4xvr | GNP | GTPase HRas | / | 0.990 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.987 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.986 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.983 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.982 | |
| 4dsn | GCP | GTPase KRas | / | 0.982 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.978 | |
| 4xvq | GNP | GTPase HRas | / | 0.977 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.976 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.975 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.975 | |
| 4dls | GNP | GTPase HRas | / | 0.974 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.972 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.970 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.970 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.967 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.966 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.965 | |
| 2rgg | GNP | GTPase HRas | / | 0.965 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.961 | |
| 3k9l | GNP | GTPase HRas | / | 0.961 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.960 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.958 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.956 | |
| 3tgp | GNP | GTPase HRas | / | 0.954 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.952 | |
| 4dsu | GDP | GTPase KRas | / | 0.946 | |
| 4wa7 | GDP | GTPase KRas | / | 0.945 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.944 | |
| 4mit | GTP | Rho-related protein racC | / | 0.941 | |
| 3kud | GDP | GTPase HRas | / | 0.940 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.940 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.937 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.937 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.936 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.936 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.931 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.931 | |
| 2cl6 | CAG | GTPase HRas | / | 0.930 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.923 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.921 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.917 | |
| 4dvg | GSP | Rho family GTPase | / | 0.917 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.913 | |
| 2ce2 | GDP | GTPase HRas | / | 0.911 | |
| 4epx | GDP | GTPase KRas | / | 0.911 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.910 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.910 | |
| 4epw | GDP | GTPase KRas | / | 0.908 | |
| 4lv6 | GDP | GTPase KRas | / | 0.907 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.906 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.903 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.902 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.899 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.899 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.897 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.897 | |
| 4q03 | GDP | GTPase KRas | / | 0.896 | |
| 1lfd | GNP | GTPase HRas | / | 0.895 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.895 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.894 | |
| 4q02 | GDP | GTPase KRas | / | 0.894 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.893 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.893 | |
| 4tq9 | GDP | GTPase KRas | / | 0.893 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.892 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.892 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.889 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.889 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.888 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.885 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.884 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.881 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.881 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.881 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.880 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.878 | |
| 3r9x | GNP | GTPase Era | / | 0.876 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.874 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.870 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.870 | |
| 4l9s | GDP | GTPase HRas | / | 0.869 | |
| 4ql3 | GDP | GTPase KRas | / | 0.869 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.867 | |
| 4luc | GDP | GTPase KRas | / | 0.867 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.864 | |
| 4l8g | GDP | GTPase KRas | / | 0.863 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.860 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.860 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.859 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.859 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.857 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.856 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.853 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.851 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.850 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.849 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.849 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.847 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.846 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.843 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.841 | |
| 4ldj | GDP | GTPase KRas | / | 0.841 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.840 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.840 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.839 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.838 | |
| 3ref | GDP | Rho family GTPase | / | 0.835 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.835 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.833 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.831 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.828 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.825 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.825 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.823 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.823 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.822 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.822 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.822 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.822 | |
| 4db1 | ANP | Myosin-7 | / | 0.821 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.817 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.815 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.815 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.814 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.814 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.810 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.809 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.808 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.808 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.805 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.803 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.802 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.802 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.801 | |
| 3ftq | GNP | Septin-2 | / | 0.801 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.797 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.796 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.793 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.791 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.790 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.789 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.788 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.787 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.786 | |
| 4lpk | GDP | GTPase KRas | / | 0.785 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.785 | |
| 4v02 | ATP | Site-determining protein | / | 0.782 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.780 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.780 | |
| 4obe | GDP | GTPase KRas | / | 0.780 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.779 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.777 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.776 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.775 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.772 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.771 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.771 | |
| 4lrw | GDP | GTPase KRas | / | 0.769 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.768 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.767 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.766 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.766 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.765 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.763 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.761 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.761 | |
| 5bn3 | ADP | NEQ263 | / | 0.761 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.761 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.760 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.760 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.759 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.757 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.757 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.757 | |
| 2fna | ADP | Uncharacterized protein | / | 0.756 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.755 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.754 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.754 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.753 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.752 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.752 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.751 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.749 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.748 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.746 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.746 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.744 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.743 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.742 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.741 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.741 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.741 | |
| 4yqf | GDP | Septin-9 | / | 0.741 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.740 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.739 | |
| 5cyo | GDP | Septin-9 | / | 0.739 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.737 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.737 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.735 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.735 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.734 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.733 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.733 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.732 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.731 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.730 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.730 | |
| 4xvu | ATP | ATPase GET3 | / | 0.730 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.729 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.727 | |
| 1xmv | ADP | Protein RecA | / | 0.727 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.727 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.726 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.726 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 5ftc | ADP | TPR domain protein | / | 0.725 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.725 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.724 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.724 | |
| 1ank | ANP | Adenylate kinase | / | 0.723 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.723 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.722 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.722 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.721 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.721 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.719 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.719 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.718 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.718 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.717 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.717 | |
| 3ieu | GDP | GTPase Era | / | 0.717 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.717 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.716 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.716 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.715 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.715 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.715 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.714 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.713 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.712 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.711 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.709 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.709 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.708 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.708 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.708 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.708 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.707 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.707 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.707 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.706 | |
| 4c2u | ANP | DNA helicase | / | 0.704 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.703 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.702 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.702 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.702 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.702 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.701 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.701 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.699 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.698 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.698 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.697 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.696 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.696 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.696 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.695 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.695 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.695 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.695 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.695 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.695 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.694 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.692 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.692 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.691 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.691 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.691 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.691 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.690 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.690 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.690 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.689 | |
| 1xms | ANP | Protein RecA | / | 0.689 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.689 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.689 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.688 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.688 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.688 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.687 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.687 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.686 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.686 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.685 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.685 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.684 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.683 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.683 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.682 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.682 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.682 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.681 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.680 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.680 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.680 | |
| 4c30 | ANP | DNA helicase | / | 0.680 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.680 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.680 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.679 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.679 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.678 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.676 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.676 | |
| 2zrj | AGS | Protein RecA | / | 0.675 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.675 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.674 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.674 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.673 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.672 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.672 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.671 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.671 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.671 | |
| 1g6o | ADP | Cag alpha | / | 0.670 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.670 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.669 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.669 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.668 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.667 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.667 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.667 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.666 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.666 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.666 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.665 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.665 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.665 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.664 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.664 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.662 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.661 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.661 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.660 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.660 | |
| 1a9x | ADP | Carbamoyl-phosphate synthase large chain | / | 0.659 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.659 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.659 | |
| 4h1v | GNP | Dynamin-1-like protein | 3.6.5.5 | 0.659 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.658 | |
| 2zro | ADP | Protein RecA | / | 0.658 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.657 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.657 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.657 | |
| 5dac | AGS | Uncharacterized protein | / | 0.657 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.657 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.655 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.655 | |
| 4aff | ATP | Nitrogen regulatory protein P-II | / | 0.655 | |
| 2a5y | ATP | Cell death protein 4 | / | 0.654 | |
| 3dm5 | GDP | Signal recognition particle 54 kDa protein | / | 0.654 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.654 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.654 | |
| 4tnp | DCP | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.654 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.653 | |
| 4n9w | GDP | Phosphatidyl-myo-inositol mannosyltransferase | 2.4.1.57 | 0.653 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.652 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.652 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.651 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.651 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.651 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.651 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.651 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.651 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.650 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.650 |