sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4hdo | GNP | Ras-related protein Rap-1b |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.225 | |
| 4l9w | GNP | GTPase HRas | / | 1.215 | |
| 3rs0 | GNP | GTPase HRas | / | 1.201 | |
| 3lbn | GNP | GTPase HRas | / | 1.198 | |
| 4dlv | GNP | GTPase HRas | / | 1.197 | |
| 3oiw | GNP | GTPase HRas | / | 1.185 | |
| 3rsl | GNP | GTPase HRas | / | 1.185 | |
| 3oiv | GNP | GTPase HRas | / | 1.183 | |
| 3rs4 | GNP | GTPase HRas | / | 1.182 | |
| 3rs5 | GNP | GTPase HRas | / | 1.182 | |
| 3rs7 | GNP | GTPase HRas | / | 1.182 | |
| 2rgc | GNP | GTPase HRas | / | 1.181 | |
| 3lbi | GNP | GTPase HRas | / | 1.180 | |
| 4dlz | GNP | GTPase HRas | / | 1.180 | |
| 4dlx | GNP | GTPase HRas | / | 1.179 | |
| 3l8y | GNP | GTPase HRas | / | 1.169 | |
| 4dlt | GNP | GTPase HRas | / | 1.167 | |
| 2c5l | GTP | GTPase HRas | / | 1.166 | |
| 2rge | GNP | GTPase HRas | / | 1.165 | |
| 3ddc | GNP | GTPase HRas | / | 1.165 | |
| 3oiu | GNP | GTPase HRas | / | 1.165 | |
| 3i3s | GNP | GTPase HRas | / | 1.164 | |
| 3k8y | GNP | GTPase HRas | / | 1.164 | |
| 3v4f | GNP | GTPase HRas | / | 1.163 | |
| 3lbh | GNP | GTPase HRas | / | 1.162 | |
| 5b2z | GNP | GTPase HRas | / | 1.162 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.148 | |
| 4dlw | GNP | GTPase HRas | / | 1.147 | |
| 2rgb | GNP | GTPase HRas | / | 1.146 | |
| 4g0n | GNP | GTPase HRas | / | 1.145 | |
| 4nyj | GNP | GTPase HRas | / | 1.142 | |
| 4dls | GNP | GTPase HRas | / | 1.129 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.126 | |
| 4k81 | GTP | GTPase HRas | / | 1.111 | |
| 4nyi | GNP | GTPase HRas | / | 1.111 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.110 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.108 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.105 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.103 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.103 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.102 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.099 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.085 | |
| 4dsn | GCP | GTPase KRas | / | 1.084 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.083 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.078 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.077 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.071 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.071 | |
| 4mit | GTP | Rho-related protein racC | / | 1.067 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 1.062 | |
| 2rgg | GNP | GTPase HRas | / | 1.058 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.058 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.057 | |
| 3k9l | GNP | GTPase HRas | / | 1.053 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.050 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.049 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.042 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.037 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.037 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.029 | |
| 3tgp | GNP | GTPase HRas | / | 1.026 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.024 | |
| 1s1c | GNP | Transforming protein RhoA | / | 1.020 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.020 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.017 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.015 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.015 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.006 | |
| 4xvr | GNP | GTPase HRas | / | 1.006 | |
| 4xvq | GNP | GTPase HRas | / | 1.005 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 1.003 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.999 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.997 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.997 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.995 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.995 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.993 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.993 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.992 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.989 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.986 | |
| 3kud | GDP | GTPase HRas | / | 0.986 | |
| 4dso | GSP | GTPase KRas | / | 0.986 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.985 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.983 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.981 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.978 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.974 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.973 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.973 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.973 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.971 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.968 | |
| 4ql3 | GDP | GTPase KRas | / | 0.968 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.958 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.953 | |
| 2ce2 | GDP | GTPase HRas | / | 0.952 | |
| 4l9s | GDP | GTPase HRas | / | 0.951 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.947 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.946 | |
| 4wa7 | GDP | GTPase KRas | / | 0.946 | |
| 4dsu | GDP | GTPase KRas | / | 0.945 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.945 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.943 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.943 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.941 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.939 | |
| 4l8g | GDP | GTPase KRas | / | 0.938 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.937 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.936 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.933 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.930 | |
| 4q02 | GDP | GTPase KRas | / | 0.930 | |
| 4tq9 | GDP | GTPase KRas | / | 0.930 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.930 | |
| 4epw | GDP | GTPase KRas | / | 0.929 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.926 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.926 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.925 | |
| 4epx | GDP | GTPase KRas | / | 0.925 | |
| 1lfd | GNP | GTPase HRas | / | 0.924 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.924 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.922 | |
| 4dvg | GSP | Rho family GTPase | / | 0.920 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.919 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.917 | |
| 4q03 | GDP | GTPase KRas | / | 0.917 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.914 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.914 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.912 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.911 | |
| 4lv6 | GDP | GTPase KRas | / | 0.911 | |
| 3r9x | GNP | GTPase Era | / | 0.910 | |
| 2cl6 | CAG | GTPase HRas | / | 0.909 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.904 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.902 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.899 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.896 | |
| 4ldj | GDP | GTPase KRas | / | 0.895 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.895 | |
| 4lpk | GDP | GTPase KRas | / | 0.891 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.889 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.888 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.888 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.887 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.885 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.885 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.885 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.884 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.884 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.884 | |
| 4obe | GDP | GTPase KRas | / | 0.881 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.876 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.876 | |
| 4lrw | GDP | GTPase KRas | / | 0.876 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.866 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.866 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.864 | |
| 3ref | GDP | Rho family GTPase | / | 0.862 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.861 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.857 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.851 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.851 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.850 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.850 | |
| 4luc | GDP | GTPase KRas | / | 0.850 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.849 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.848 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.848 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.847 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.845 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.845 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.844 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.844 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.844 | |
| 3ftq | GNP | Septin-2 | / | 0.842 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.840 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.837 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.834 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.832 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.830 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.830 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.829 | |
| 4db1 | ANP | Myosin-7 | / | 0.828 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.827 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.827 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.826 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.824 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.822 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.822 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.821 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.821 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.821 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.817 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.817 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.817 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.817 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.816 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.815 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.814 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.813 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.812 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.812 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.810 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.809 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.808 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.804 | |
| 1ank | ANP | Adenylate kinase | / | 0.803 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.803 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.802 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.802 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.801 | |
| 5bn3 | ADP | NEQ263 | / | 0.801 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.797 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.797 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.796 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.795 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.795 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.793 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.793 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.793 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.791 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.789 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.789 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.787 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.785 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.785 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.785 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.784 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.783 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.783 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.782 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.781 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.781 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.777 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.777 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.776 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.776 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.775 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.773 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.772 | |
| 2fna | ADP | Uncharacterized protein | / | 0.772 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.771 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.770 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.769 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.768 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.766 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.765 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.765 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.764 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.763 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.762 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.760 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.760 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.760 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.759 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.759 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.757 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.757 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.757 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.757 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.756 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.756 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.756 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.755 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.755 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.755 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.754 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.753 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.753 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.753 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.752 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.751 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.751 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.750 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.745 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.745 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.745 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.743 | |
| 5cyo | GDP | Septin-9 | / | 0.743 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.743 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.742 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.742 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.741 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.740 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.739 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.739 | |
| 4ike | ADP | Adenylate kinase | / | 0.739 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.738 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.738 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.737 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.736 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.735 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.735 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.735 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.735 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.735 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.734 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.733 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.729 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.729 | |
| 1xmv | ADP | Protein RecA | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.728 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.726 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.726 | |
| 4yqf | GDP | Septin-9 | / | 0.726 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 4jky | ADP | Adenylate kinase | / | 0.725 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.724 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.721 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.721 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.721 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.721 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.719 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.718 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.718 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.718 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.717 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.716 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.716 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.716 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.716 | |
| 4xvu | ATP | ATPase GET3 | / | 0.716 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.713 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.713 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.712 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.712 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.712 | |
| 2eck | ADP | Adenylate kinase | / | 0.708 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.708 | |
| 4v02 | ATP | Site-determining protein | / | 0.708 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.707 | |
| 4jld | ADP | Adenylate kinase | / | 0.707 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.706 | |
| 1xms | ANP | Protein RecA | / | 0.705 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.705 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.704 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.704 | |
| 4c30 | ANP | DNA helicase | / | 0.704 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.703 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.703 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.702 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.702 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.702 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.702 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.701 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.701 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.701 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.700 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.700 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.700 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.699 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.699 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.698 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.698 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.697 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.696 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.696 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.695 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.695 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.694 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.694 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.694 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.692 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.692 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.690 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.690 | |
| 1q12 | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.690 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.689 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.689 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.689 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.688 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.687 | |
| 1ake | AP5 | Adenylate kinase | / | 0.686 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.684 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.684 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.684 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.683 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.682 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.682 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.681 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.681 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.681 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.680 | |
| 4jlo | ADP | Adenylate kinase | / | 0.680 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.679 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.679 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.678 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.678 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.677 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.676 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.675 | |
| 2zrj | AGS | Protein RecA | / | 0.675 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.675 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.675 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.674 | |
| 5dac | AGS | Uncharacterized protein | / | 0.673 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.673 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.672 | |
| 1g6o | ADP | Cag alpha | / | 0.671 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.671 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.670 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.669 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.669 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.668 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.668 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.668 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.667 | |
| 1nly | AGS | Cag alpha | / | 0.666 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.665 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.665 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.664 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.664 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.662 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.661 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.661 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.661 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.660 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.659 | |
| 4kod | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.656 | |
| 2a84 | ATP | Pantothenate synthetase | 6.3.2.1 | 0.656 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.655 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.655 | |
| 2zr9 | DTP | Protein RecA | / | 0.654 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.654 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.654 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.653 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.653 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.652 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.652 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.652 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.651 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.651 | |
| 2ad5 | ADP | CTP synthase | / | 0.650 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.650 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.650 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.650 | |
| 4h5c | YS4 | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.650 |