2.960 Å
X-ray
2013-05-11
Name: | Transitional endoplasmic reticulum ATPase |
---|---|
ID: | TERA_HUMAN |
AC: | P55072 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.6.4.6 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 91 % |
F | 9 % |
B-Factor: | 82.162 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.951 | 1589.625 |
% Hydrophobic | % Polar |
---|---|
45.65 | 54.35 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.56 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
24.7612 | 17.15 | 27.8543 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | O | GLY- 207 | 2.89 | 166.35 | H-Bond (Ligand Donor) |
N1 | N | GLY- 207 | 3.05 | 163.42 | H-Bond (Protein Donor) |
O3A | N | GLY- 250 | 2.92 | 141.98 | H-Bond (Protein Donor) |
O2B | N | LYS- 251 | 3 | 155.87 | H-Bond (Protein Donor) |
O1B | N | THR- 252 | 2.91 | 160.76 | H-Bond (Protein Donor) |
O1B | OG1 | THR- 252 | 2.89 | 173.79 | H-Bond (Protein Donor) |
O1A | N | LEU- 253 | 2.87 | 147.7 | H-Bond (Protein Donor) |
C2' | CD2 | LEU- 253 | 4.07 | 0 | Hydrophobic |
O2A | CZ | ARG- 359 | 3.68 | 0 | Ionic (Protein Cationic) |
C4' | CD2 | PHE- 360 | 4.41 | 0 | Hydrophobic |
N3 | NE2 | HIS- 384 | 3.13 | 162.81 | H-Bond (Protein Donor) |
C1' | CB | ALA- 409 | 4.49 | 0 | Hydrophobic |
C4' | CB | ALA- 409 | 3.64 | 0 | Hydrophobic |
C1' | CB | ALA- 412 | 4.04 | 0 | Hydrophobic |