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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4kodADPTransitional endoplasmic reticulum ATPase3.6.4.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4kodADPTransitional endoplasmic reticulum ATPase3.6.4.61.000
3hu3AGSTransitional endoplasmic reticulum ATPase3.6.4.60.588
3hu2AGSTransitional endoplasmic reticulum ATPase3.6.4.60.530
3hu1AGSTransitional endoplasmic reticulum ATPase3.6.4.60.522
4klnAGSTransitional endoplasmic reticulum ATPase3.6.4.60.510
4ko8AGSTransitional endoplasmic reticulum ATPase3.6.4.60.510