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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kod ADP Transitional endoplasmic reticulum ATPase 3.6.4.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kod ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.948
3d8b ADPFidgetin-like protein 1 3.6.4 0.753
1s3s ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.743
3k1j ADPATP-dependent protease Lon / 0.732
2ce7 ADPATP-dependent zinc metalloprotease FtsH / 0.719
4ww0 ADPATP-dependent zinc metalloprotease FtsH / 0.715
4kln AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.709
4d81 ADPAAA ATPase, central domain protein / 0.707
1e32 ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.685
3cf0 ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.676
1ht2 ADPATP-dependent protease ATPase subunit HslU / 0.674
1in5 ADPHolliday junction ATP-dependent DNA helicase RuvB / 0.673
2i1v ADP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 2.7.1.105 0.672
4ko8 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.672
3hu2 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.671
2axn ADP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 / 0.665
4o25 GTPGTP-binding protein Rheb / 0.661
1gp2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.660
4hdo GNPRas-related protein Rap-1b / 0.659
1uad GNPRas-related protein Ral-A / 0.658
3k9l GNPGTPase HRas / 0.658
4dlz GNPGTPase HRas / 0.658
1ofh ADPATP-dependent protease ATPase subunit HslU / 0.657
4xvq GNPGTPase HRas / 0.657
3qpv ADP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 2.7.1.105 0.656
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.655
2dwp ACP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 2.7.1.105 0.654
3nbx ADPATPase RavA 3.6.3 0.654
1xnj ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.653
5fl3 ADPPili retraction protein PilT / 0.653
4ma4 ADP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 2.7.1.105 0.652