sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.199 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.061 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.059 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 1.058 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 1.050 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.046 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.045 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.040 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.039 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.032 | |
| 1s1c | GNP | Transforming protein RhoA | / | 1.026 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.024 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.024 | |
| 2rgc | GNP | GTPase HRas | / | 1.023 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.022 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.022 | |
| 4dlx | GNP | GTPase HRas | / | 1.022 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.019 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.019 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 1.015 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.015 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 1.009 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.009 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.008 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.008 | |
| 3k9l | GNP | GTPase HRas | / | 1.005 | |
| 1cxz | GSP | Transforming protein RhoA | / | 1.001 | |
| 4k81 | GTP | GTPase HRas | / | 1.000 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.999 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.991 | |
| 4dlz | GNP | GTPase HRas | / | 0.991 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.990 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.986 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.984 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.983 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.982 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.981 | |
| 2rge | GNP | GTPase HRas | / | 0.981 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.979 | |
| 4nyi | GNP | GTPase HRas | / | 0.979 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.978 | |
| 4xvq | GNP | GTPase HRas | / | 0.978 | |
| 4dso | GSP | GTPase KRas | / | 0.973 | |
| 3v4f | GNP | GTPase HRas | / | 0.972 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.971 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.970 | |
| 5b2z | GNP | GTPase HRas | / | 0.970 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.966 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.965 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.963 | |
| 4mit | GTP | Rho-related protein racC | / | 0.962 | |
| 4dvg | GSP | Rho family GTPase | / | 0.959 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.958 | |
| 2rgg | GNP | GTPase HRas | / | 0.957 | |
| 3oiw | GNP | GTPase HRas | / | 0.957 | |
| 3rsl | GNP | GTPase HRas | / | 0.957 | |
| 3tgp | GNP | GTPase HRas | / | 0.957 | |
| 4l9w | GNP | GTPase HRas | / | 0.957 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.955 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.954 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.954 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.952 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.949 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.947 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.946 | |
| 4g0n | GNP | GTPase HRas | / | 0.946 | |
| 2rgb | GNP | GTPase HRas | / | 0.943 | |
| 3rs0 | GNP | GTPase HRas | / | 0.943 | |
| 3rs7 | GNP | GTPase HRas | / | 0.943 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.942 | |
| 3lbn | GNP | GTPase HRas | / | 0.942 | |
| 3rs4 | GNP | GTPase HRas | / | 0.942 | |
| 3rs5 | GNP | GTPase HRas | / | 0.942 | |
| 3l8y | GNP | GTPase HRas | / | 0.941 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.940 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.940 | |
| 4dls | GNP | GTPase HRas | / | 0.940 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.939 | |
| 4dlt | GNP | GTPase HRas | / | 0.939 | |
| 4dlv | GNP | GTPase HRas | / | 0.939 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.936 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.935 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.935 | |
| 4dlw | GNP | GTPase HRas | / | 0.935 | |
| 3ddc | GNP | GTPase HRas | / | 0.934 | |
| 2c5l | GTP | GTPase HRas | / | 0.932 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.932 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.931 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.931 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.931 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.929 | |
| 3oiu | GNP | GTPase HRas | / | 0.929 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.929 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.926 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.925 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.925 | |
| 3oiv | GNP | GTPase HRas | / | 0.922 | |
| 4xvr | GNP | GTPase HRas | / | 0.922 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.920 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.920 | |
| 3ref | GDP | Rho family GTPase | / | 0.920 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.914 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.913 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.912 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.912 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.911 | |
| 3lbh | GNP | GTPase HRas | / | 0.909 | |
| 3r9x | GNP | GTPase Era | / | 0.907 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.907 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.904 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.899 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.899 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.898 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.897 | |
| 3kud | GDP | GTPase HRas | / | 0.896 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.895 | |
| 4epx | GDP | GTPase KRas | / | 0.890 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.888 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.888 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.888 | |
| 1lfd | GNP | GTPase HRas | / | 0.886 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.885 | |
| 4nyj | GNP | GTPase HRas | / | 0.885 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.883 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.882 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.881 | |
| 3i3s | GNP | GTPase HRas | / | 0.880 | |
| 3k8y | GNP | GTPase HRas | / | 0.880 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.880 | |
| 4dsn | GCP | GTPase KRas | / | 0.877 | |
| 4dsu | GDP | GTPase KRas | / | 0.875 | |
| 4wa7 | GDP | GTPase KRas | / | 0.874 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.871 | |
| 4tq9 | GDP | GTPase KRas | / | 0.871 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.868 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.866 | |
| 4q02 | GDP | GTPase KRas | / | 0.865 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.865 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.864 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.862 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.861 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.861 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.858 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.857 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.857 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.855 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.854 | |
| 3lbi | GNP | GTPase HRas | / | 0.854 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.850 | |
| 4lv6 | GDP | GTPase KRas | / | 0.850 | |
| 4lpk | GDP | GTPase KRas | / | 0.849 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.848 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.848 | |
| 4q03 | GDP | GTPase KRas | / | 0.847 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.846 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.845 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.845 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.844 | |
| 3ftq | GNP | Septin-2 | / | 0.843 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.843 | |
| 4l9s | GDP | GTPase HRas | / | 0.843 | |
| 4ql3 | GDP | GTPase KRas | / | 0.842 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.841 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.841 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.840 | |
| 2ce2 | GDP | GTPase HRas | / | 0.839 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.838 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.835 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.834 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.833 | |
| 2cl6 | CAG | GTPase HRas | / | 0.833 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.831 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.831 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.831 | |
| 4epw | GDP | GTPase KRas | / | 0.831 | |
| 4ldj | GDP | GTPase KRas | / | 0.831 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.830 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.829 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.828 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.826 | |
| 4obe | GDP | GTPase KRas | / | 0.824 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.824 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.821 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.820 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.820 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.820 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.819 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.817 | |
| 4db1 | ANP | Myosin-7 | / | 0.817 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 4luc | GDP | GTPase KRas | / | 0.815 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.814 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.813 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.811 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.811 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.810 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.808 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.806 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.806 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.806 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.805 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.804 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.803 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.801 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.801 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.801 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.800 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.800 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.799 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.799 | |
| 5bn3 | ADP | NEQ263 | / | 0.799 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.798 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.798 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.796 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.794 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.792 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.791 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.788 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.788 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.787 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.783 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.783 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.779 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.779 | |
| 4l8g | GDP | GTPase KRas | / | 0.777 | |
| 2fna | ADP | Uncharacterized protein | / | 0.774 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.772 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.770 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.769 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.768 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.767 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.767 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.765 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.765 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.764 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.763 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.762 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.762 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.762 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.762 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.761 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.760 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.759 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.759 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 4v02 | ATP | Site-determining protein | / | 0.759 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.758 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.757 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.757 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.757 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.756 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.756 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.755 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.754 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.754 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.754 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.753 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.752 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.752 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.752 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.751 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.751 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.751 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.750 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.750 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.748 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.748 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.747 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.746 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.746 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.746 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.745 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.744 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.744 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.744 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.744 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.743 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.743 | |
| 1ank | ANP | Adenylate kinase | / | 0.742 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.742 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.742 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.742 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.742 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.741 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.740 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.740 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.740 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.739 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.739 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.739 | |
| 1xms | ANP | Protein RecA | / | 0.738 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.738 | |
| 4jld | ADP | Adenylate kinase | / | 0.737 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.736 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.736 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.736 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.735 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.735 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.734 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.734 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.733 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.733 | |
| 4yqf | GDP | Septin-9 | / | 0.732 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.731 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.730 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.729 | |
| 1xmv | ADP | Protein RecA | / | 0.729 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.727 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.726 | |
| 2zts | ADP | Uncharacterized protein | / | 0.726 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.726 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.724 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.723 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.722 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.722 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.722 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.721 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.720 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.720 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.719 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.718 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.718 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.718 | |
| 5cyo | GDP | Septin-9 | / | 0.718 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.717 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.717 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.716 | |
| 4ike | ADP | Adenylate kinase | / | 0.716 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.716 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 4lrw | GDP | GTPase KRas | / | 0.715 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.714 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.714 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.712 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.711 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.710 | |
| 3ieu | GDP | GTPase Era | / | 0.710 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.710 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.710 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.709 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.709 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.709 | |
| 4xvu | ATP | ATPase GET3 | / | 0.709 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.706 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.706 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.705 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.704 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.704 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.703 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.702 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.701 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.701 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.701 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.700 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.700 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.700 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.699 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.699 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.699 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.698 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.698 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.698 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.697 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.696 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.696 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.695 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.694 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.693 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.693 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.693 | |
| 4jky | ADP | Adenylate kinase | / | 0.693 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.691 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.691 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.690 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.690 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.690 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.690 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.690 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.690 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.689 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.689 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.687 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.687 | |
| 2ad5 | ADP | CTP synthase | / | 0.686 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.686 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.685 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.685 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.685 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.684 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.684 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.683 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.683 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.682 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.682 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.681 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.680 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.680 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.679 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.679 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.677 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.677 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.677 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.675 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.675 | |
| 4c30 | ANP | DNA helicase | / | 0.675 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.675 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.674 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.673 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.673 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.672 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.671 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.671 | |
| 1g6o | ADP | Cag alpha | / | 0.670 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.670 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.670 | |
| 1ake | AP5 | Adenylate kinase | / | 0.669 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.669 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.669 | |
| 4gyi | ADP | Uncharacterized protein | / | 0.669 | |
| 2zxu | DST | tRNA dimethylallyltransferase | 2.5.1.75 | 0.668 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.667 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.667 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.667 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.666 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.666 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.666 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.666 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.662 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.662 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.661 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.660 | |
| 1n2e | APC | Pantothenate synthetase | 6.3.2.1 | 0.660 | |
| 5ftf | ADP | TPR domain protein | / | 0.660 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.658 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.658 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.658 | |
| 4iaf | ADP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.658 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.657 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.657 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.657 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.656 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.655 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.655 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.652 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.652 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.650 |