sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4dlz | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4dlz | GNP | GTPase HRas | / | 1.306 | |
| 4dlx | GNP | GTPase HRas | / | 1.268 | |
| 2rgc | GNP | GTPase HRas | / | 1.250 | |
| 3rs5 | GNP | GTPase HRas | / | 1.236 | |
| 3rs4 | GNP | GTPase HRas | / | 1.235 | |
| 3rs7 | GNP | GTPase HRas | / | 1.235 | |
| 3lbi | GNP | GTPase HRas | / | 1.218 | |
| 3rs0 | GNP | GTPase HRas | / | 1.218 | |
| 4dlt | GNP | GTPase HRas | / | 1.218 | |
| 4dlv | GNP | GTPase HRas | / | 1.218 | |
| 3l8y | GNP | GTPase HRas | / | 1.216 | |
| 3rsl | GNP | GTPase HRas | / | 1.216 | |
| 3lbn | GNP | GTPase HRas | / | 1.214 | |
| 4l9w | GNP | GTPase HRas | / | 1.214 | |
| 3i3s | GNP | GTPase HRas | / | 1.213 | |
| 3k8y | GNP | GTPase HRas | / | 1.212 | |
| 3v4f | GNP | GTPase HRas | / | 1.203 | |
| 4dlw | GNP | GTPase HRas | / | 1.200 | |
| 5b2z | GNP | GTPase HRas | / | 1.200 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.198 | |
| 3oiw | GNP | GTPase HRas | / | 1.195 | |
| 3oiu | GNP | GTPase HRas | / | 1.184 | |
| 4dsn | GCP | GTPase KRas | / | 1.182 | |
| 4dls | GNP | GTPase HRas | / | 1.180 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.180 | |
| 2rge | GNP | GTPase HRas | / | 1.179 | |
| 3oiv | GNP | GTPase HRas | / | 1.179 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.179 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.179 | |
| 2rgb | GNP | GTPase HRas | / | 1.166 | |
| 3k9l | GNP | GTPase HRas | / | 1.160 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.157 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.136 | |
| 3ddc | GNP | GTPase HRas | / | 1.136 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.134 | |
| 4nyj | GNP | GTPase HRas | / | 1.132 | |
| 2c5l | GTP | GTPase HRas | / | 1.131 | |
| 3lbh | GNP | GTPase HRas | / | 1.129 | |
| 4k81 | GTP | GTPase HRas | / | 1.122 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.117 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.115 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.105 | |
| 4g0n | GNP | GTPase HRas | / | 1.105 | |
| 4dso | GSP | GTPase KRas | / | 1.103 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.094 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.094 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.091 | |
| 4nyi | GNP | GTPase HRas | / | 1.082 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.075 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.066 | |
| 2rgg | GNP | GTPase HRas | / | 1.065 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.063 | |
| 4xvq | GNP | GTPase HRas | / | 1.058 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.057 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.054 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.048 | |
| 3tgp | GNP | GTPase HRas | / | 1.044 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.042 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.041 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.041 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.040 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.039 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.038 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.035 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.032 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 1.029 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 1.027 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.016 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.015 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.014 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.009 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 1.008 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.004 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.002 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.000 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.999 | |
| 2ce2 | GDP | GTPase HRas | / | 0.999 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.998 | |
| 3kud | GDP | GTPase HRas | / | 0.998 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.995 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.994 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.991 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.986 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.985 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.982 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.981 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.980 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.978 | |
| 4mit | GTP | Rho-related protein racC | / | 0.977 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.971 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.970 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.967 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.967 | |
| 2cl6 | CAG | GTPase HRas | / | 0.966 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.965 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.965 | |
| 4wa7 | GDP | GTPase KRas | / | 0.964 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.962 | |
| 4ql3 | GDP | GTPase KRas | / | 0.962 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.960 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.959 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.958 | |
| 4epx | GDP | GTPase KRas | / | 0.958 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.957 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.956 | |
| 4dvg | GSP | Rho family GTPase | / | 0.953 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.951 | |
| 4l9s | GDP | GTPase HRas | / | 0.948 | |
| 4tq9 | GDP | GTPase KRas | / | 0.946 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.943 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.941 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.937 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.935 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.933 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.932 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.932 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.932 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.930 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.930 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.930 | |
| 3r9x | GNP | GTPase Era | / | 0.927 | |
| 4q02 | GDP | GTPase KRas | / | 0.926 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.925 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.921 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.920 | |
| 4l8g | GDP | GTPase KRas | / | 0.919 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.915 | |
| 4xvr | GNP | GTPase HRas | / | 0.915 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.914 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.913 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.913 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.913 | |
| 4dsu | GDP | GTPase KRas | / | 0.910 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.907 | |
| 1lfd | GNP | GTPase HRas | / | 0.906 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.906 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.902 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.901 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.900 | |
| 4epw | GDP | GTPase KRas | / | 0.896 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.894 | |
| 4ldj | GDP | GTPase KRas | / | 0.893 | |
| 3ftq | GNP | Septin-2 | / | 0.892 | |
| 4q03 | GDP | GTPase KRas | / | 0.889 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.888 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.885 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.885 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.884 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.881 | |
| 3ref | GDP | Rho family GTPase | / | 0.880 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.879 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.879 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.878 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.877 | |
| 4obe | GDP | GTPase KRas | / | 0.877 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.875 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.875 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.875 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.873 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.873 | |
| 4lv6 | GDP | GTPase KRas | / | 0.873 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.867 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.865 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.862 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.862 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.860 | |
| 4lpk | GDP | GTPase KRas | / | 0.860 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.858 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.856 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.854 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.852 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.851 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.851 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.851 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.847 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.847 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.845 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.845 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.843 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.840 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.838 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.837 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.835 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.834 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.833 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.832 | |
| 4c2u | ANP | DNA helicase | / | 0.831 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.827 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.826 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.826 | |
| 4lrw | GDP | GTPase KRas | / | 0.826 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.825 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.824 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.822 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.820 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.817 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.815 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.815 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.815 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.815 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.814 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.813 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.813 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.813 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.812 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.811 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.807 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.806 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.805 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.804 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.804 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.801 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.799 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.799 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.798 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.795 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.794 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.794 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.793 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.793 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.791 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.790 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.788 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.785 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.784 | |
| 2fna | ADP | Uncharacterized protein | / | 0.784 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.784 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.784 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.784 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.784 | |
| 5bn3 | ADP | NEQ263 | / | 0.784 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.782 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.781 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.781 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.780 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.780 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.775 | |
| 4yqf | GDP | Septin-9 | / | 0.775 | |
| 4db1 | ANP | Myosin-7 | / | 0.774 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.771 | |
| 1ank | ANP | Adenylate kinase | / | 0.770 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.770 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.770 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.770 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.770 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.769 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.769 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.769 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.768 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.768 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.768 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.768 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.768 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.767 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.765 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.765 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.765 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.765 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.764 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.763 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.763 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.762 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.760 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.759 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.759 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.758 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.758 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.758 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.755 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.755 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.754 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.753 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.752 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.751 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.751 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.750 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.750 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.750 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.750 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.749 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.748 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.748 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.746 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.746 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.746 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.746 | |
| 5cyo | GDP | Septin-9 | / | 0.746 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.745 | |
| 4luc | GDP | GTPase KRas | / | 0.743 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.742 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.741 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.740 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.740 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.738 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 1xms | ANP | Protein RecA | / | 0.736 | |
| 4v02 | ATP | Site-determining protein | / | 0.736 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.736 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.734 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.733 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.733 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.733 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.730 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.730 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.730 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.730 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.730 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.729 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.726 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.724 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.723 | |
| 2zts | ADP | Uncharacterized protein | / | 0.723 | |
| 3ieu | GDP | GTPase Era | / | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.721 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.720 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.720 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.720 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.720 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.719 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.719 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.718 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.718 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.718 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 4xvu | ATP | ATPase GET3 | / | 0.718 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.717 | |
| 4jlo | ADP | Adenylate kinase | / | 0.717 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.716 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.716 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.716 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.716 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.716 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.714 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.713 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.713 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.713 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.712 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.712 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.711 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.711 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.710 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.710 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.709 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.709 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.709 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.709 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.709 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.709 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.708 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.707 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.707 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.707 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.707 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.706 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.706 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.703 | |
| 4c30 | ANP | DNA helicase | / | 0.703 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.703 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.703 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.702 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.700 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.699 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.698 | |
| 4jld | ADP | Adenylate kinase | / | 0.697 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.696 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.695 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.695 | |
| 4ike | ADP | Adenylate kinase | / | 0.695 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.692 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.691 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.690 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.690 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.690 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.687 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.687 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.686 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.686 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.686 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.684 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.683 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.682 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.682 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.680 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.680 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.680 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.679 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.679 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.679 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.678 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.678 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.677 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.677 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.676 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.676 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.676 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.674 | |
| 2zrj | AGS | Protein RecA | / | 0.673 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.673 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.672 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.672 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.672 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.671 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.671 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.670 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.669 | |
| 3ldw | IPE | Farnesyl pyrophosphate synthase, putative | / | 0.668 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.668 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.666 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.665 | |
| 4h1v | GNP | Dynamin-1-like protein | 3.6.5.5 | 0.664 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.663 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.663 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.663 | |
| 2eck | ADP | Adenylate kinase | / | 0.663 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.663 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.663 | |
| 5fsi | 8DG | 7,8-dihydro-8-oxoguanine triphosphatase | 3.6.1.55 | 0.663 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.662 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.662 | |
| 1mbt | FAD | UDP-N-acetylenolpyruvoylglucosamine reductase | 1.3.1.98 | 0.661 | |
| 4iai | ADP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.661 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.661 | |
| 4jky | ADP | Adenylate kinase | / | 0.661 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.660 | |
| 1s4o | GDP | Glycolipid 2-alpha-mannosyltransferase | / | 0.659 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.659 | |
| 4kod | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.658 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.656 | |
| 4n9w | GDP | Phosphatidyl-myo-inositol mannosyltransferase | 2.4.1.57 | 0.656 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.655 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.654 | |
| 2c5e | GDD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.654 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.654 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.654 | |
| 4fid | GDP | G protein alpha subunit, putative | / | 0.654 | |
| 1xmv | ADP | Protein RecA | / | 0.653 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.653 | |
| 2ad5 | ADP | CTP synthase | / | 0.653 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.653 | |
| 3h0r | ATP | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | 6.3.5 | 0.651 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.651 | |
| 3lq2 | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.650 |