sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4dlt | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4dlt | GNP | GTPase HRas | / | 1.225 | |
| 4dlv | GNP | GTPase HRas | / | 1.221 | |
| 3rs4 | GNP | GTPase HRas | / | 1.219 | |
| 3rs5 | GNP | GTPase HRas | / | 1.219 | |
| 3rs7 | GNP | GTPase HRas | / | 1.219 | |
| 2rgc | GNP | GTPase HRas | / | 1.218 | |
| 4dlz | GNP | GTPase HRas | / | 1.218 | |
| 4dlx | GNP | GTPase HRas | / | 1.217 | |
| 3lbn | GNP | GTPase HRas | / | 1.200 | |
| 3rs0 | GNP | GTPase HRas | / | 1.200 | |
| 3rsl | GNP | GTPase HRas | / | 1.200 | |
| 3l8y | GNP | GTPase HRas | / | 1.199 | |
| 4l9w | GNP | GTPase HRas | / | 1.199 | |
| 3i3s | GNP | GTPase HRas | / | 1.197 | |
| 3k8y | GNP | GTPase HRas | / | 1.197 | |
| 3lbi | GNP | GTPase HRas | / | 1.187 | |
| 3oiu | GNP | GTPase HRas | / | 1.187 | |
| 4dlw | GNP | GTPase HRas | / | 1.186 | |
| 3v4f | GNP | GTPase HRas | / | 1.185 | |
| 5b2z | GNP | GTPase HRas | / | 1.183 | |
| 3oiw | GNP | GTPase HRas | / | 1.181 | |
| 3oiv | GNP | GTPase HRas | / | 1.179 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.178 | |
| 3lbh | GNP | GTPase HRas | / | 1.170 | |
| 2rgb | GNP | GTPase HRas | / | 1.169 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.167 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.167 | |
| 2rge | GNP | GTPase HRas | / | 1.164 | |
| 4dls | GNP | GTPase HRas | / | 1.164 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.163 | |
| 2c5l | GTP | GTPase HRas | / | 1.148 | |
| 3ddc | GNP | GTPase HRas | / | 1.147 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.139 | |
| 4dsn | GCP | GTPase KRas | / | 1.131 | |
| 4nyj | GNP | GTPase HRas | / | 1.130 | |
| 4g0n | GNP | GTPase HRas | / | 1.122 | |
| 4nyi | GNP | GTPase HRas | / | 1.110 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.100 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.098 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.091 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.087 | |
| 3k9l | GNP | GTPase HRas | / | 1.080 | |
| 4dso | GSP | GTPase KRas | / | 1.071 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.070 | |
| 4k81 | GTP | GTPase HRas | / | 1.069 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.069 | |
| 2rgg | GNP | GTPase HRas | / | 1.064 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.050 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.044 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.039 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.038 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.037 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.034 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.029 | |
| 3tgp | GNP | GTPase HRas | / | 1.027 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.020 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.018 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.015 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.014 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.012 | |
| 4xvq | GNP | GTPase HRas | / | 1.010 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.006 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.005 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.000 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.998 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.997 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.995 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.984 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.984 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.983 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.982 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.981 | |
| 3kud | GDP | GTPase HRas | / | 0.981 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.980 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.978 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.972 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.970 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.967 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.967 | |
| 4ql3 | GDP | GTPase KRas | / | 0.965 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.963 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.962 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.954 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.953 | |
| 2ce2 | GDP | GTPase HRas | / | 0.952 | |
| 4l9s | GDP | GTPase HRas | / | 0.951 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.950 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.950 | |
| 2cl6 | CAG | GTPase HRas | / | 0.948 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.947 | |
| 4mit | GTP | Rho-related protein racC | / | 0.947 | |
| 4wa7 | GDP | GTPase KRas | / | 0.946 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.943 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.942 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.942 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.941 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.941 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.939 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.939 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.938 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.937 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.935 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.933 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.933 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.933 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.931 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.930 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.930 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.929 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.928 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.927 | |
| 4epx | GDP | GTPase KRas | / | 0.925 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.924 | |
| 3r9x | GNP | GTPase Era | / | 0.924 | |
| 1lfd | GNP | GTPase HRas | / | 0.923 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.923 | |
| 4l8g | GDP | GTPase KRas | / | 0.921 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.920 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.918 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.917 | |
| 4xvr | GNP | GTPase HRas | / | 0.916 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.915 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.915 | |
| 4epw | GDP | GTPase KRas | / | 0.914 | |
| 4tq9 | GDP | GTPase KRas | / | 0.914 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.911 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.910 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.910 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.909 | |
| 4dsu | GDP | GTPase KRas | / | 0.908 | |
| 4q03 | GDP | GTPase KRas | / | 0.907 | |
| 4dvg | GSP | Rho family GTPase | / | 0.901 | |
| 4lv6 | GDP | GTPase KRas | / | 0.899 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.899 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.896 | |
| 4ldj | GDP | GTPase KRas | / | 0.895 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.893 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.886 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.885 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.885 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.884 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.883 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.881 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.881 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.880 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.880 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.879 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.879 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.878 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.872 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.868 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.867 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.863 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.862 | |
| 4lpk | GDP | GTPase KRas | / | 0.862 | |
| 3ftq | GNP | Septin-2 | / | 0.860 | |
| 4lrw | GDP | GTPase KRas | / | 0.859 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.858 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.856 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.856 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.855 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.855 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.851 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.850 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.850 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.846 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.845 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.842 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.840 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.839 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.839 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.838 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.835 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.834 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.834 | |
| 4luc | GDP | GTPase KRas | / | 0.834 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.832 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.831 | |
| 3ref | GDP | Rho family GTPase | / | 0.830 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.828 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.827 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.826 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.825 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.825 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.822 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.818 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.817 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.817 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.817 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.816 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.815 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.815 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.814 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.813 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.813 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.812 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.810 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.809 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.805 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.804 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.803 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.802 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.796 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.796 | |
| 4db1 | ANP | Myosin-7 | / | 0.796 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.796 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.795 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.794 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.793 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.790 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.790 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.787 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.786 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.786 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.785 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.784 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.783 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.783 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.783 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.783 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.782 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.779 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.778 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.777 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.777 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.773 | |
| 1ank | ANP | Adenylate kinase | / | 0.772 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.772 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.770 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.770 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.770 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.768 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.767 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.766 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.765 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.765 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.765 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.763 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.763 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.763 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.762 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.762 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.761 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.760 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.760 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.760 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.757 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.757 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.756 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.756 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.756 | |
| 2fna | ADP | Uncharacterized protein | / | 0.756 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.755 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.755 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.755 | |
| 5bn3 | ADP | NEQ263 | / | 0.755 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.754 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.752 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.752 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.751 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.750 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.750 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.749 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.748 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.748 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.747 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.747 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.747 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.746 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.745 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.743 | |
| 4yqf | GDP | Septin-9 | / | 0.742 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.741 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.741 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.741 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.741 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.738 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.738 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.738 | |
| 1xms | ANP | Protein RecA | / | 0.738 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.738 | |
| 4v02 | ATP | Site-determining protein | / | 0.738 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.737 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.736 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.735 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.735 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.735 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.734 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.733 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.730 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.730 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.730 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.729 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.727 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.727 | |
| 1xmv | ADP | Protein RecA | / | 0.726 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.726 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.725 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.724 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.722 | |
| 4ike | ADP | Adenylate kinase | / | 0.721 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.721 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.720 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.718 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.718 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.717 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.717 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.715 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.715 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.715 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.713 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.712 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.710 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.709 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.709 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.709 | |
| 5cyo | GDP | Septin-9 | / | 0.709 | |
| 1nly | AGS | Cag alpha | / | 0.708 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.708 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.707 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.705 | |
| 5ftc | ADP | TPR domain protein | / | 0.705 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.704 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.704 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.704 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.704 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.704 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.703 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.703 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.702 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.701 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.700 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.699 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.699 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.698 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.698 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.697 | |
| 2eck | ADP | Adenylate kinase | / | 0.696 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.695 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.695 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.695 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.695 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.694 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.693 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.692 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.691 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.691 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.690 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.690 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.690 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.689 | |
| 4c30 | ANP | DNA helicase | / | 0.689 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.689 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.688 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.688 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.688 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.687 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.687 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.687 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.686 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.685 | |
| 3ieu | GDP | GTPase Era | / | 0.685 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.685 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.685 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.684 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.684 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.682 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.681 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.680 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.679 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.678 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.678 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.677 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.676 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.675 | |
| 2zrj | AGS | Protein RecA | / | 0.674 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.673 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.673 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.673 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.673 | |
| 4jlo | ADP | Adenylate kinase | / | 0.673 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.672 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.672 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.672 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.672 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.672 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.672 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.672 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.671 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.671 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.670 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.670 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.670 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.669 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.669 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.668 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.668 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.668 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.668 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.667 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.666 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.666 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.665 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.665 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.664 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.664 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.662 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.661 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.658 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.657 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.657 | |
| 1e0j | ANP | DNA primase/helicase | 2.7.7 | 0.656 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.655 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.655 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.654 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.654 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.654 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.653 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.653 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.653 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.650 |