sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3lbh | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3lbh | GNP | GTPase HRas | / | 1.244 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.215 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.196 | |
| 2rge | GNP | GTPase HRas | / | 1.186 | |
| 3ddc | GNP | GTPase HRas | / | 1.185 | |
| 3k8y | GNP | GTPase HRas | / | 1.185 | |
| 3i3s | GNP | GTPase HRas | / | 1.184 | |
| 3oiv | GNP | GTPase HRas | / | 1.183 | |
| 3rs7 | GNP | GTPase HRas | / | 1.182 | |
| 4dlt | GNP | GTPase HRas | / | 1.170 | |
| 3rs4 | GNP | GTPase HRas | / | 1.167 | |
| 3rs5 | GNP | GTPase HRas | / | 1.167 | |
| 2rgc | GNP | GTPase HRas | / | 1.166 | |
| 3lbn | GNP | GTPase HRas | / | 1.166 | |
| 4dlx | GNP | GTPase HRas | / | 1.165 | |
| 3oiw | GNP | GTPase HRas | / | 1.164 | |
| 4l9w | GNP | GTPase HRas | / | 1.164 | |
| 3rs0 | GNP | GTPase HRas | / | 1.163 | |
| 3rsl | GNP | GTPase HRas | / | 1.163 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.162 | |
| 4g0n | GNP | GTPase HRas | / | 1.155 | |
| 5b2z | GNP | GTPase HRas | / | 1.151 | |
| 4dlw | GNP | GTPase HRas | / | 1.149 | |
| 3oiu | GNP | GTPase HRas | / | 1.135 | |
| 4dlv | GNP | GTPase HRas | / | 1.131 | |
| 2c5l | GTP | GTPase HRas | / | 1.129 | |
| 4dlz | GNP | GTPase HRas | / | 1.129 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.126 | |
| 3v4f | GNP | GTPase HRas | / | 1.125 | |
| 2rgb | GNP | GTPase HRas | / | 1.117 | |
| 4nyi | GNP | GTPase HRas | / | 1.104 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.102 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.091 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.090 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.077 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.074 | |
| 3k9l | GNP | GTPase HRas | / | 1.064 | |
| 4dso | GSP | GTPase KRas | / | 1.056 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.052 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.051 | |
| 2rgg | GNP | GTPase HRas | / | 1.048 | |
| 4k81 | GTP | GTPase HRas | / | 1.045 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.044 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.040 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.032 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.030 | |
| 3l8y | GNP | GTPase HRas | / | 1.024 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.021 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.020 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.020 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.018 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.018 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.017 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.015 | |
| 3tgp | GNP | GTPase HRas | / | 1.011 | |
| 4xvq | GNP | GTPase HRas | / | 1.009 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 1.003 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.002 | |
| 3lbi | GNP | GTPase HRas | / | 1.002 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.002 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.994 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.989 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.989 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.988 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.985 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.984 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.984 | |
| 4dls | GNP | GTPase HRas | / | 0.983 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.981 | |
| 4nyj | GNP | GTPase HRas | / | 0.975 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.973 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.968 | |
| 2ce2 | GDP | GTPase HRas | / | 0.967 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.967 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.965 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.965 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.964 | |
| 4ql3 | GDP | GTPase KRas | / | 0.964 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.963 | |
| 2cl6 | CAG | GTPase HRas | / | 0.957 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.956 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.954 | |
| 4l9s | GDP | GTPase HRas | / | 0.954 | |
| 4mit | GTP | Rho-related protein racC | / | 0.949 | |
| 4wa7 | GDP | GTPase KRas | / | 0.949 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.948 | |
| 4q02 | GDP | GTPase KRas | / | 0.947 | |
| 4dsn | GCP | GTPase KRas | / | 0.942 | |
| 1lfd | GNP | GTPase HRas | / | 0.941 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.940 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.940 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.938 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.936 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.936 | |
| 4tq9 | GDP | GTPase KRas | / | 0.933 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.931 | |
| 4epw | GDP | GTPase KRas | / | 0.929 | |
| 4epx | GDP | GTPase KRas | / | 0.925 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.924 | |
| 4l8g | GDP | GTPase KRas | / | 0.922 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.920 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.916 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.916 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.914 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.914 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.914 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.914 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.909 | |
| 4dsu | GDP | GTPase KRas | / | 0.909 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.907 | |
| 4q03 | GDP | GTPase KRas | / | 0.907 | |
| 4xvr | GNP | GTPase HRas | / | 0.906 | |
| 4lv6 | GDP | GTPase KRas | / | 0.904 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.903 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.902 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.901 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.896 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.895 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.894 | |
| 4ldj | GDP | GTPase KRas | / | 0.894 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.891 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.886 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.886 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.885 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.882 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.882 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.877 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.870 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.869 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.868 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.865 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.864 | |
| 4lpk | GDP | GTPase KRas | / | 0.863 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.856 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.852 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.851 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.851 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.849 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.848 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.846 | |
| 4lrw | GDP | GTPase KRas | / | 0.844 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.843 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.843 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.843 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.842 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.842 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.841 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.840 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.839 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.839 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.838 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.838 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.836 | |
| 3kud | GDP | GTPase HRas | / | 0.835 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.833 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.833 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.833 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.833 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.831 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.831 | |
| 3ref | GDP | Rho family GTPase | / | 0.831 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.830 | |
| 3ftq | GNP | Septin-2 | / | 0.830 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.828 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.827 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.826 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.826 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.826 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.825 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.825 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.823 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.822 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.822 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.821 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.820 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.818 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.817 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.816 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.813 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.812 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.812 | |
| 4luc | GDP | GTPase KRas | / | 0.812 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.812 | |
| 5bn3 | ADP | NEQ263 | / | 0.812 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.811 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.809 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.806 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.806 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.806 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.805 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.803 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.803 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.803 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.803 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.802 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.799 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.799 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.798 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.797 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.796 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.795 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.793 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.793 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.792 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.791 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.789 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.789 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.786 | |
| 1ake | AP5 | Adenylate kinase | / | 0.786 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.785 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.783 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.783 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.783 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.783 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.781 | |
| 3r9x | GNP | GTPase Era | / | 0.781 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.780 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.779 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.778 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.778 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.777 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.776 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.775 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.775 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.775 | |
| 1ank | ANP | Adenylate kinase | / | 0.774 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.774 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.774 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.774 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.773 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.773 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.773 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.771 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.771 | |
| 4yqf | GDP | Septin-9 | / | 0.771 | |
| 2fna | ADP | Uncharacterized protein | / | 0.770 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.770 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.769 | |
| 4jlo | ADP | Adenylate kinase | / | 0.769 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.769 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.768 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.768 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.767 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.766 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.766 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.766 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.765 | |
| 4dvg | GSP | Rho family GTPase | / | 0.765 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.765 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.765 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.765 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.764 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.763 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.762 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.762 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.761 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.761 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.759 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.759 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.758 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.758 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.758 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.758 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.756 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.756 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.756 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.755 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.755 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.753 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.753 | |
| 4ike | ADP | Adenylate kinase | / | 0.753 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.752 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.751 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.750 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.749 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.749 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.749 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.747 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.747 | |
| 5cyo | GDP | Septin-9 | / | 0.747 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.746 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.746 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.745 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.744 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.743 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.743 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.742 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.741 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.740 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.740 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.740 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 4v02 | ATP | Site-determining protein | / | 0.738 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 2zts | ADP | Uncharacterized protein | / | 0.737 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.737 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.737 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.735 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.735 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.735 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.735 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.735 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.735 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.733 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.732 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.731 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.731 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.731 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.731 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.730 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.729 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.729 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.729 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.729 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.728 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.728 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.725 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.725 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.725 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.724 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.724 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.723 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.723 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.721 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.721 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 1xmv | ADP | Protein RecA | / | 0.720 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.720 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.720 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.720 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.719 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.719 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.719 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.719 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.718 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.717 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.716 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.716 | |
| 4xvu | ATP | ATPase GET3 | / | 0.714 | |
| 2eck | ADP | Adenylate kinase | / | 0.712 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.710 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.710 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.710 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.710 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.710 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.709 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.709 | |
| 1xms | ANP | Protein RecA | / | 0.708 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.708 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.707 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.707 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.707 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.707 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.704 | |
| 4c30 | ANP | DNA helicase | / | 0.704 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.704 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.703 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.703 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.701 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.701 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.700 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.700 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.699 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.699 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.699 | |
| 4db1 | ANP | Myosin-7 | / | 0.699 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.698 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.697 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.697 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.696 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.696 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.696 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.696 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.696 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.696 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.695 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.694 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.694 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.693 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.692 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.691 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.690 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.690 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.689 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.688 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.688 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.686 | |
| 2ad5 | ADP | CTP synthase | / | 0.686 | |
| 4iei | ADP | Gene 2 protein | / | 0.686 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.684 | |
| 4c2u | ANP | DNA helicase | / | 0.684 | |
| 2npi | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.683 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.683 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.683 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.683 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.683 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.682 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.682 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.682 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.682 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.681 | |
| 3ieu | GDP | GTPase Era | / | 0.681 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.680 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.679 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.678 | |
| 4jld | ADP | Adenylate kinase | / | 0.678 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.677 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.677 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.676 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.676 | |
| 2zrj | AGS | Protein RecA | / | 0.674 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.674 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.674 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.671 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.671 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.670 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.669 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.669 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.668 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.668 | |
| 1nly | AGS | Cag alpha | / | 0.668 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.668 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.668 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.667 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.666 | |
| 4bub | ADP | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase | / | 0.666 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.665 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.665 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.664 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.663 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.663 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.663 | |
| 2a5y | ATP | Cell death protein 4 | / | 0.662 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.662 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.662 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.661 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.660 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.659 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.659 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.659 | |
| 5ftf | ADP | TPR domain protein | / | 0.659 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.658 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.656 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.654 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.654 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.653 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.653 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.653 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.652 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.652 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.652 | |
| 1s4p | GDP | Glycolipid 2-alpha-mannosyltransferase | / | 0.651 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.650 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.650 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.650 |